miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25458_pma-mir-30d:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 11 gggagctgtaaacatccctgactggaagctg 41
||||||||||||||||| ||||||||||||
Sbjct: 6 gggagctgtaaacatccacgactggaagctg 36
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 9 gctgtaaacatccccgactggaagctg 35
>25921_gga-mir-30e:mirbase
Length = 96
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
||||||||||||| |||||||||||||
Sbjct: 17 gctgtaaacatccttgactggaagctg 43
>25920_gga-mir-30d:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 4 gctgtaaacatccccgactggaagctg 30
>26421_tgu-mir-30a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctgg 42
|||||||||||| ||||||||||||||
Sbjct: 19 ctgtaaacatccttgactggaagctgg 45
>26422_tgu-mir-30a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctgg 42
|||||||||||| ||||||||||||||
Sbjct: 19 ctgtaaacatccttgactggaagctgg 45
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctg 27
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctg 27
>31453_oan-mir-30d:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 27 gctgtaaacatccccgactggaagctg 53
>31454_oan-mir-30e:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctgg 42
|||||||||||| ||||||||||||||
Sbjct: 15 ctgtaaacatccttgactggaagctgg 41
>34251_dre-mir-30e-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctgg 42
|||||||||||| ||||||||||||||
Sbjct: 10 ctgtaaacatccttgactggaagctgg 36
>34575_fru-mir-30d:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 19 gctgtaaacatccccgactggaagctg 45
>34722_tni-mir-30d:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gctgtaaacatccctgactggaagctg 41
|||||||||||||| ||||||||||||
Sbjct: 13 gctgtaaacatccccgactggaagctg 39
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctgg 42
|||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctgg 26
>26979_eca-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>27686_mml-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>28396_hsa-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>30182_ptr-mir-30e:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 15 ctgtaaacatccttgactggaagctg 40
>30786_ppy-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
||||||||||||| ||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctg 36
>31811_mmu-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>32692_rno-mir-30d:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
||||||||||||| ||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctg 36
>32693_rno-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>33169_bta-mir-30e:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctg 41
>33945_ssc-mir-30e:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctg 33
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
|||||||||||| |||||||||||||
Sbjct: 8 ctgtaaacatccttgactggaagctg 33
>34250_dre-mir-30d:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 ctgtaaacatccctgactggaagctg 41
||||||||||||| ||||||||||||
Sbjct: 34 ctgtaaacatccccgactggaagctg 59
>26658_cfa-mir-30e:mirbase
Length = 64
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatccttgactggaagctg 25
>26978_eca-mir-30d:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 7 tgtaaacatccccgactggaagctg 31
>27685_mml-mir-30d:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 5 tgtaaacatccccgactggaagctg 29
>28193_mne-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>33168_bta-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 tgtaaacatccctgactggaagctg 41
|||||||||||| ||||||||||||
Sbjct: 8 tgtaaacatccccgactggaagctg 32
