miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32687_rno-mir-30a:mirbase
Length = 71
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 8 gcaactgtaaacatcctcgactgaaagctgtg 39
||||||||||||||||||||||| ||||||||
Sbjct: 1 gcaactgtaaacatcctcgactggaagctgtg 32
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gagcaactgtaaacatcctcgactgaaagctgtg 39
|||| |||||||||||||||||||| ||||||||
Sbjct: 4 gagcgactgtaaacatcctcgactggaagctgtg 37
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gagcaactgtaaacatcctcgactgaaagctgtg 39
|||| |||||||||||||||||||| ||||||||
Sbjct: 4 gagcgactgtaaacatcctcgactggaagctgtg 37
>31450_oan-mir-30a:mirbase
Length = 137
Score = 52.0 bits (26), Expect = 7e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 6 gagcaactgtaaacatcctcgactgaaagctgtg 39
|||| |||||||||||||||||||| ||||||||
Sbjct: 24 gagcgactgtaaacatcctcgactggaagctgtg 57
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aagggctttcagtcagatgtttgc 77
||||||||||||||||||||||||
Sbjct: 42 aagggctttcagtcagatgtttgc 65
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 aagggctttcagtcagatgtttgc 77
||||||||||||||||||||||||
Sbjct: 42 aagggctttcagtcagatgtttgc 65
>25915_gga-mir-30a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>25916_gga-mir-30a:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>27680_mml-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>27681_mml-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||||| ||||||||
Sbjct: 4 actgtaaacatcctcgactggaagctgtg 32
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||||||||| ||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctgtg 32
>33164_bta-mir-30a:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||||||||| ||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctgtg 28
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||||||||| ||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtg 47
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||||||||| ||||||||
Sbjct: 20 ctgtaaacatcctcgactggaagctgtg 47
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tgtaaacatcctcgactgaaagctgtg 39
|||||||||||||||||| ||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctgtg 27
>34250_dre-mir-30d:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtgct 41
|||||||||||| |||||| ||||||||||
Sbjct: 34 ctgtaaacatccccgactggaagctgtgct 63
>33945_ssc-mir-30e:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||| ||||| ||||||||
Sbjct: 7 actgtaaacatccttgactggaagctgtg 35
>33946_ssc-mir-30e:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgtg 39
|||||||||||||| ||||| ||||||||
Sbjct: 7 actgtaaacatccttgactggaagctgtg 35
>25455_pma-mir-30a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagc 35
||||||||||||||||||| ||||
Sbjct: 8 ctgtaaacatcctcgactggaagc 31
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
|||||||||||| |||||| ||||||||
Sbjct: 10 ctgtaaacatccccgactggaagctgtg 37
>25737_xtr-mir-30e:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||| ||||| ||||||||
Sbjct: 16 ctgtaaacatccttgactggaagctgtg 43
>25921_gga-mir-30e:mirbase
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 12 ctgtaaacatcctcgactgaaagctgtg 39
||||||||||||| ||||| ||||||||
Sbjct: 18 ctgtaaacatccttgactggaagctgtg 45
>25920_gga-mir-30d:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 42 gctttcagtcagatgtttgc 61
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 39 gctttcagtcagatgtttgc 58
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 39 gctttcagtcagatgtttgc 58
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 38 gctttcagtcagatgtttgc 57
>26978_eca-mir-30d:mirbase
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 46 gctttcagtcagatgtttgc 65
>26979_eca-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>27685_mml-mir-30d:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 44 gctttcagtcagatgtttgc 63
>27686_mml-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>28193_mne-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>28396_hsa-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>30182_ptr-mir-30e:mirbase
Length = 91
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 14 actgtaaacatccttgactggaagctgt 41
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>30786_ppy-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>31453_oan-mir-30d:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 68 gctttcagtcagatgtttgc 87
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 51 gctttcagtcagatgtttgc 70
>31811_mmu-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>32692_rno-mir-30d:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 51 gctttcagtcagatgtttgc 70
>32693_rno-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>33168_bta-mir-30d:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 45 gctttcagtcagatgtttgc 64
>33169_bta-mir-30e:mirbase
Length = 92
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 11 actgtaaacatcctcgactgaaagctgt 38
|||||||||||||| ||||| |||||||
Sbjct: 15 actgtaaacatccttgactggaagctgt 42
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 58 gctttcagtcagatgtttgc 77
||||||||||||||||||||
Sbjct: 47 gctttcagtcagatgtttgc 66
