miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25456_pma-mir-30b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 6 gggagctgtaaacatccacgactggaagctg 36
||||||||||||||||| ||||||||||||
Sbjct: 11 gggagctgtaaacatccctgactggaagctg 41
>25736_xtr-mir-30d:mirbase
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 9 gctgtaaacatccccgactggaagctg 35
>25920_gga-mir-30d:mirbase
Length = 64
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 4 gctgtaaacatccccgactggaagctg 30
>26427_tgu-mir-30d:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctg 27
>26428_tgu-mir-30d:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 1 gctgtaaacatccccgactggaagctg 27
>27356_mdo-mir-30a:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 4 gctgtaaacatcctcgactggaagctg 30
>31453_oan-mir-30d:mirbase
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 27 gctgtaaacatccccgactggaagctg 53
>33938_ssc-mir-30a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 19 gctgtaaacatcctcgactggaagctg 45
>33939_ssc-mir-30a:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 19 gctgtaaacatcctcgactggaagctg 45
>34575_fru-mir-30d:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 19 gctgtaaacatccccgactggaagctg 45
>34722_tni-mir-30d:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| |||||||||||||
Sbjct: 13 gctgtaaacatccccgactggaagctg 39
>25731_xtr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25732_xtr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25915_gga-mir-30a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>25916_gga-mir-30a:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>26423_tgu-mir-30b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctg 35
>26424_tgu-mir-30b:mirbase
Length = 73
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 10 ctgtaaacatcctcgactggaagctg 35
>27680_mml-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>27681_mml-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28278_ggo-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28279_ggo-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>28391_hsa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30066_ppa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30065_ppa-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30176_ptr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30177_ptr-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30781_ppy-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>30782_ppy-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>31450_oan-mir-30a:mirbase
Length = 137
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 30 ctgtaaacatcctcgactggaagctg 55
>31806_mmu-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>31810_mmu-mir-30d:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctg 36
>32687_rno-mir-30a:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 5 ctgtaaacatcctcgactggaagctg 30
>32692_rno-mir-30d:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 11 ctgtaaacatccccgactggaagctg 36
>33164_bta-mir-30a:mirbase
Length = 67
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 1 ctgtaaacatcctcgactggaagctg 26
>34250_dre-mir-30d:mirbase
Length = 128
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagctg 36
|||||||||||| |||||||||||||
Sbjct: 34 ctgtaaacatccccgactggaagctg 59
>26653_cfa-mir-30a:mirbase
Length = 63
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatcctcgactggaagctg 25
>26657_cfa-mir-30d:mirbase
Length = 60
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 1 tgtaaacatccccgactggaagctg 25
>26978_eca-mir-30d:mirbase
Length = 71
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 7 tgtaaacatccccgactggaagctg 31
>27685_mml-mir-30d:mirbase
Length = 69
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 5 tgtaaacatccccgactggaagctg 29
>28193_mne-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>28281_ggo-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>28395_hsa-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30068_ppa-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30181_ptr-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>30785_ppy-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>33168_bta-mir-30d:mirbase
Length = 70
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 6 tgtaaacatccccgactggaagctg 30
>33944_ssc-mir-30d:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 tgtaaacatccacgactggaagctg 36
||||||||||| |||||||||||||
Sbjct: 8 tgtaaacatccccgactggaagctg 32
>25455_pma-mir-30a:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 11 ctgtaaacatccacgactggaagc 34
|||||||||||| |||||||||||
Sbjct: 8 ctgtaaacatcctcgactggaagc 31
>25921_gga-mir-30e:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 10 gctgtaaacatccacgactggaagctg 36
||||||||||||| ||||||||||||
Sbjct: 17 gctgtaaacatccttgactggaagctg 43
