miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25470_pma-mir-100c:mirbase
Length = 88
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 tccgccggtcgccacaaacccgtagatccgaacttgtggtgggagttttgcacaagctcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 tccgccggtcgccacaaacccgtagatccgaacttgtggtgggagttttgcacaagctcg 27
Query: 61 tgtctacgggtctgtgtcggcagggc 86
||||||||||||||||||||||||||
Sbjct: 26 tgtctacgggtctgtgtcggcagggc 1
>27501_age-mir-100:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtgggagttttgcacaagctcgtgtcta 66
||||||||||||||||||||||||||||||| || | |||||||||| |||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggtgttag-tctgcacaagcttgtgtcta 61
>27563_lla-mir-100:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtgggagttttgcacaagctcgtgtcta 66
||||||||||||||||||||||||||||||| || | |||||||||| |||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggtgttag-tctgcacaagcttgtgtcta 61
>33187_bta-mir-100:mirbase
Length = 76
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtgg 42
||||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggtgg 38
>27364_mdo-mir-100:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggtg 37
>27610_sla-mir-100:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggtg 37
>31471_oan-mir-100:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||||
Sbjct: 8 gccacaaacccgtagatccgaacttgtggtg 38
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||||
Sbjct: 5 gccacaaacccgtagatccgaacttgtggtg 35
>25930_gga-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>27704_mml-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>28293_ggo-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>28414_hsa-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>30080_ppa-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>30198_ptr-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>30803_ppy-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtggt 40
||||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtggt 36
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 cacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||
Sbjct: 20 cacaaacccgtagatccgaacttgtggtg 48
>34579_fru-mir-100:mirbase
Length = 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 cacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||
Sbjct: 1 cacaaacccgtagatccgaacttgtggtg 29
>34726_tni-mir-100:mirbase
Length = 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 13 cacaaacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||||||
Sbjct: 1 cacaaacccgtagatccgaacttgtggtg 29
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
||||||||||||||||||||||||||||
Sbjct: 5 gccacaaacccgtagatccgaacttgtg 32
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
||||||||||||||||||||||||||||
Sbjct: 5 gccacaaacccgtagatccgaacttgtg 32
>31827_mmu-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtg 34
>32708_rno-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
||||||||||||||||||||||||||||
Sbjct: 7 gccacaaacccgtagatccgaacttgtg 34
>33958_ssc-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
||||||||||||||||||||||||||||
Sbjct: 10 gccacaaacccgtagatccgaacttgtg 37
>26997_eca-mir-100:mirbase
Length = 55
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtggtg 41
|||||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgaacttgtggtg 25
>24672_bfl-mir-100:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
|||| |||||||||||||||||||||||
Sbjct: 15 gccataaacccgtagatccgaacttgtg 42
>25469_pma-mir-100b:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 9 tcgccacaaacccgtagatccgaacttg 36
||||||||||||||||||| ||||||||
Sbjct: 9 tcgccacaaacccgtagattcgaacttg 36
>25755_xtr-mir-100:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 gccacaaacccgtagatccgaacttgtg 38
|||| |||||||||||||||||||||||
Sbjct: 4 gccataaacccgtagatccgaacttgtg 31
>38866_lgi-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtg 38
|||||||||||||||||||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>34262_dre-mir-99-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 cacaaacccgtagatccgaacttgtgg 39
||||||||||||||||||| |||||||
Sbjct: 8 cacaaacccgtagatccgatcttgtgg 34
>34877_sko-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtg 38
|||||||||||||||||||||||
Sbjct: 20 aaacccgtagatccgaacttgtg 42
>35288_aga-mir-100:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtg 38
|||||||||||||||||||||||
Sbjct: 14 aaacccgtagatccgaacttgtg 36
>35366_ame-mir-100:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtgg 39
|||||||||||||||||||||||
Sbjct: 19 aacccgtagatccgaacttgtgg 41
>37648_nvi-mir-100:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtgg 39
|||||||||||||||||||||||
Sbjct: 19 aacccgtagatccgaacttgtgg 41
>37737_tca-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtgg 39
|||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtgg 32
>37738_tca-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtgg 39
|||||||||||||||||||||||
Sbjct: 10 aacccgtagatccgaacttgtgg 32
>39244_nve-mir-100:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 18 acccgtagatccgaacttgtgg 39
||||||||||||||||||||||
Sbjct: 17 acccgtagatccgaacttgtgg 38
>25754_xtr-mir-99:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 7 aaacccgtagatccgatcttgtggtg 32
>26995_eca-mir-99a-2:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>27562_lla-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>27702_mml-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>28201_mne-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>28292_ggo-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>28412_hsa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>30079_ppa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>30196_ptr-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>31470_oan-mir-99:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 23 aaacccgtagatccgatcttgtggtg 48
>31825_mmu-mir-99a:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 4 aaacccgtagatccgatcttgtggtg 29
>32706_rno-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>33185_bta-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggtg 37
>33956_ssc-mir-99a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggtg 41
|||||||||||||||| |||||||||
Sbjct: 11 aaacccgtagatccgatcttgtggtg 36
>34970_isc-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35010_dpu-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>35190_aae-mir-100:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 31 aacccgtagatccgaacttgtg 52
>35537_bmo-mir-100:mirbase
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>36020_cqu-mir-100:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 23 aacccgtagatccgaacttgtg 44
>38112_bma-mir-100b:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtg 38
||||||||||||||||||||||
Sbjct: 21 aacccgtagatccgaacttgtg 42
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtggtg 41
||||||||||||||| |||||||||
Sbjct: 1 aacccgtagatccgatcttgtggtg 25
>26673_cfa-mir-99a-1:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 17 aacccgtagatccgaacttgtggtg 41
||||||||||||||| |||||||||
Sbjct: 1 aacccgtagatccgatcttgtggtg 25
>30802_ppy-mir-99a:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 aaacccgtagatccgaacttgtggt 40
|||||||||||||||| ||||||||
Sbjct: 12 aaacccgtagatccgatcttgtggt 36
>35062_api-mir-100:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 18 acccgtagatccgaacttgtg 38
|||||||||||||||||||||
Sbjct: 22 acccgtagatccgaacttgtg 42
