miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25468_pma-mir-100a:mirbase
Length = 89
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Minus
Query: 1 gccctgccgacacagacccgtagacacgagcttgtgcaaaactcccaccacaagttcgga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 86 gccctgccgacacagacccgtagacacgagcttgtgcaaaactcccaccacaagttcgga 27
Query: 61 tctacgggtttgtggcgaccggcgga 86
||||||||||||||||||||||||||
Sbjct: 26 tctacgggtttgtggcgaccggcgga 1
>27501_age-mir-100:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 21 tagacacgagcttgtgcaaaactcccaccacaagttcggatctacgggtttgtggc 76
||||||| |||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 61 tagacacaagcttgtgcaga-ctaacaccacaagttcggatctacgggtttgtggc 7
>27563_lla-mir-100:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 2e-11
Identities = 51/56 (91%), Gaps = 1/56 (1%)
Strand = Plus / Minus
Query: 21 tagacacgagcttgtgcaaaactcccaccacaagttcggatctacgggtttgtggc 76
||||||| |||||||||| | || |||||||||||||||||||||||||||||||
Sbjct: 61 tagacacaagcttgtgcaga-ctaacaccacaagttcggatctacgggtttgtggc 7
>33187_bta-mir-100:mirbase
Length = 76
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Minus
Query: 45 ccaccacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||||
Sbjct: 38 ccaccacaagttcggatctacgggtttgtggc 7
>27364_mdo-mir-100:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtggc 76
|||||||||||||||||||||||||||||||
Sbjct: 37 caccacaagttcggatctacgggtttgtggc 7
>27610_sla-mir-100:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtggc 76
|||||||||||||||||||||||||||||||
Sbjct: 37 caccacaagttcggatctacgggtttgtggc 7
>31471_oan-mir-100:mirbase
Length = 81
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtggc 76
|||||||||||||||||||||||||||||||
Sbjct: 38 caccacaagttcggatctacgggtttgtggc 8
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 7e-11
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtggc 76
|||||||||||||||||||||||||||||||
Sbjct: 35 caccacaagttcggatctacgggtttgtggc 5
>25930_gga-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>27704_mml-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>28293_ggo-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>28414_hsa-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>30080_ppa-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>30198_ptr-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>30803_ppy-mir-100:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||||
Sbjct: 36 accacaagttcggatctacgggtttgtggc 7
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtg 74
|||||||||||||||||||||||||||||
Sbjct: 48 caccacaagttcggatctacgggtttgtg 20
>34579_fru-mir-100:mirbase
Length = 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtg 74
|||||||||||||||||||||||||||||
Sbjct: 29 caccacaagttcggatctacgggtttgtg 1
>34726_tni-mir-100:mirbase
Length = 63
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtttgtg 74
|||||||||||||||||||||||||||||
Sbjct: 29 caccacaagttcggatctacgggtttgtg 1
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||
Sbjct: 32 cacaagttcggatctacgggtttgtggc 5
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||
Sbjct: 32 cacaagttcggatctacgggtttgtggc 5
>31827_mmu-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||
Sbjct: 34 cacaagttcggatctacgggtttgtggc 7
>32708_rno-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||
Sbjct: 34 cacaagttcggatctacgggtttgtggc 7
>33958_ssc-mir-100:mirbase
Length = 80
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||||||||
Sbjct: 37 cacaagttcggatctacgggtttgtggc 10
>26997_eca-mir-100:mirbase
Length = 55
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtt 70
|||||||||||||||||||||||||
Sbjct: 25 caccacaagttcggatctacgggtt 1
>24672_bfl-mir-100:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||| ||||
Sbjct: 42 cacaagttcggatctacgggtttatggc 15
>25469_pma-mir-100b:mirbase
Length = 94
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 51 caagttcggatctacgggtttgtggcga 78
|||||||| |||||||||||||||||||
Sbjct: 36 caagttcgaatctacgggtttgtggcga 9
>25755_xtr-mir-100:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtttgtggc 76
||||||||||||||||||||||| ||||
Sbjct: 31 cacaagttcggatctacgggtttatggc 4
>38866_lgi-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggttt 71
|||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggttt 20
>34262_dre-mir-99-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggtttgtg 74
||||||| |||||||||||||||||||
Sbjct: 34 ccacaagatcggatctacgggtttgtg 8
>34877_sko-mir-100:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggttt 71
|||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggttt 20
>35288_aga-mir-100:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggttt 71
|||||||||||||||||||||||
Sbjct: 36 cacaagttcggatctacgggttt 14
>35366_ame-mir-100:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggtt 70
|||||||||||||||||||||||
Sbjct: 41 ccacaagttcggatctacgggtt 19
>37648_nvi-mir-100:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggtt 70
|||||||||||||||||||||||
Sbjct: 41 ccacaagttcggatctacgggtt 19
>37737_tca-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggtt 70
|||||||||||||||||||||||
Sbjct: 32 ccacaagttcggatctacgggtt 10
>37738_tca-mir-100:mirbase
Length = 76
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggtt 70
|||||||||||||||||||||||
Sbjct: 32 ccacaagttcggatctacgggtt 10
>39244_nve-mir-100:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 48 ccacaagttcggatctacgggt 69
||||||||||||||||||||||
Sbjct: 38 ccacaagttcggatctacgggt 17
>25754_xtr-mir-99:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 32 caccacaagatcggatctacgggttt 7
>26995_eca-mir-99a-2:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>27562_lla-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>27702_mml-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>28201_mne-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>28292_ggo-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>28412_hsa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>30079_ppa-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>30196_ptr-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>31470_oan-mir-99:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 48 caccacaagatcggatctacgggttt 23
>31825_mmu-mir-99a:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 29 caccacaagatcggatctacgggttt 4
>32706_rno-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>33185_bta-mir-99a:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 37 caccacaagatcggatctacgggttt 12
>33956_ssc-mir-99a:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggttt 71
||||||||| ||||||||||||||||
Sbjct: 36 caccacaagatcggatctacgggttt 11
>34970_isc-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggtt 21
>35010_dpu-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggtt 21
>35190_aae-mir-100:mirbase
Length = 126
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 52 cacaagttcggatctacgggtt 31
>35537_bmo-mir-100:mirbase
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggtt 21
>36020_cqu-mir-100:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 44 cacaagttcggatctacgggtt 23
>38112_bma-mir-100b:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggtt 70
||||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggtt 21
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtt 70
||||||||| |||||||||||||||
Sbjct: 25 caccacaagatcggatctacgggtt 1
>26673_cfa-mir-99a-1:mirbase
Length = 59
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 caccacaagttcggatctacgggtt 70
||||||||| |||||||||||||||
Sbjct: 25 caccacaagatcggatctacgggtt 1
>30802_ppy-mir-99a:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 47 accacaagttcggatctacgggttt 71
|||||||| ||||||||||||||||
Sbjct: 36 accacaagatcggatctacgggttt 12
>35062_api-mir-100:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 49 cacaagttcggatctacgggt 69
|||||||||||||||||||||
Sbjct: 42 cacaagttcggatctacgggt 22
