miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31854_mmu-mir-129-2:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 66 ccccaaaaagcattcg 81
>31855_mmu-mir-129-2:mirbase
Length = 90
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 66 ccccaaaaagcattcg 81
>32730_rno-mir-129-2:mirbase
Length = 97
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 11 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 69
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 70 ccccaaaaagcattcg 85
>33209_bta-mir-129-2:mirbase
Length = 94
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 8 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 66
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 67 ccccaaaaagcattcg 82
>33210_bta-mir-129-2:mirbase
Length = 94
Score = 81.8 bits (41), Expect = 7e-17
Identities = 70/76 (92%), Gaps = 4/76 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 8 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 66
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 67 ccccaaaaagcattcg 82
>27020_eca-mir-129b:mirbase
Length = 74
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacc 65
||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacc 59
Query: 66 ccaaaaagcattcg 79
||||||||||||||
Sbjct: 60 ccaaaaagcattcg 73
>27021_eca-mir-129b:mirbase
Length = 74
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 9 gcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacc 65
||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||
Sbjct: 1 gcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacc 59
Query: 66 ccaaaaagcattcg 79
||||||||||||||
Sbjct: 60 ccaaaaagcattcg 73
>28440_hsa-mir-129-2:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
Query: 64 ccccaaaaagcatt 77
||||||||||||||
Sbjct: 66 ccccaaaaagcatt 79
>28441_hsa-mir-129-2:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
Query: 64 ccccaaaaagcatt 77
||||||||||||||
Sbjct: 66 ccccaaaaagcatt 79
>30217_ptr-mir-129-2:mirbase
Length = 89
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 6 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 64
Query: 64 ccccaaaaagcatt 77
||||||||||||||
Sbjct: 65 ccccaaaaagcatt 78
>30826_ppy-mir-129-2:mirbase
Length = 90
Score = 77.8 bits (39), Expect = 1e-15
Identities = 68/74 (91%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||
Sbjct: 7 tcgcgaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagccctta 65
Query: 64 ccccaaaaagcatt 77
||||||||||||||
Sbjct: 66 ccccaaaaagcatt 79
>26458_tgu-mir-129:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 68/76 (89%), Gaps = 3/76 (3%)
Strand = Plus / Plus
Query: 7 tcgcgaatctttttgcggtttgggcttgctgttcat--cta-atagccggcaagccctta 63
||||||||||||||||||| |||||||||||| ||| ||| || |||| |||||||||
Sbjct: 3 tcgcgaatctttttgcggtctgggcttgctgtacataactacctacccgggaagccctta 62
Query: 64 ccccaaaaagcattcg 79
||||||||||||||||
Sbjct: 63 ccccaaaaagcattcg 78
>27727_mml-mir-129-2:mirbase
Length = 92
Score = 73.8 bits (37), Expect = 2e-14
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 11 gaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacccc 67
||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||
Sbjct: 12 gaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacccc 70
Query: 68 aaaaagcattcg 79
||||||||||||
Sbjct: 71 aaaaagcattcg 82
>33977_ssc-mir-129a:mirbase
Length = 80
Score = 73.8 bits (37), Expect = 2e-14
Identities = 66/72 (91%), Gaps = 4/72 (5%)
Strand = Plus / Plus
Query: 11 gaatctttttgcggtttgggcttgctgttcat--ct-aatagccggcaagcccttacccc 67
||||||||||||||| |||||||||||| ||| || ||||||||| |||||||||||||
Sbjct: 7 gaatctttttgcggtctgggcttgctgtacataactcaatagccgg-aagcccttacccc 65
Query: 68 aaaaagcattcg 79
||||||||||||
Sbjct: 66 aaaaagcattcg 77
>34740_tni-mir-129-1:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 60/68 (88%), Gaps = 1/68 (1%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtttgggcttgctgttcatctaatagccggcaagcccttaccccaa 69
|||||||||||||||| |||||||||||||| ||| | || | |||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttc-tctgctcacccggaagcccttaccccaa 67
Query: 70 aaagcatt 77
||||||||
Sbjct: 68 aaagcatt 75
>25770_xtr-mir-129-1:mirbase
Length = 90
Score = 56.0 bits (28), Expect = 4e-09
Identities = 61/71 (85%), Gaps = 7/71 (9%)
Strand = Plus / Plus
Query: 12 aatctttttgcggtttgggcttgctgttcatctaa-----tagccggcaagcccttaccc 66
|||||||||||||| |||||||||||| || ||| ||||||| ||||||||||||
Sbjct: 11 aatctttttgcggtctgggcttgctgt--atgtaaatacctagccgggaagcccttaccc 68
Query: 67 caaaaagcatt 77
|||||||||||
Sbjct: 69 caaaaagcatt 79
>31484_oan-mir-129:mirbase
Length = 128
Score = 56.0 bits (28), Expect = 4e-09
Identities = 56/65 (86%), Gaps = 4/65 (6%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttcatctaa----tagccggcaagcccttacccca 68
||||||||||||| |||||||||||||| ||||| ||| | | ||||||||||||||
Sbjct: 28 atctttttgcggtctgggcttgctgttcctctaatcagtagtcaggaagcccttacccca 87
Query: 69 aaaag 73
|||||
Sbjct: 88 aaaag 92
>34288_dre-mir-129-2:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtttgggcttgctgttc 40
|||||||||||||||| ||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttc 39
>34593_fru-mir-129-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 10 cgaatctttttgcggtttgggcttgctgttc 40
|||||||||||||||| ||||||||||||||
Sbjct: 9 cgaatctttttgcggtctgggcttgctgttc 39
>26697_cfa-mir-129-2:mirbase
Length = 63
Score = 50.1 bits (25), Expect = 3e-07
Identities = 57/64 (89%), Gaps = 4/64 (6%)
Strand = Plus / Plus
Query: 15 ctttttgcggtttgggcttgctgttcat--cta-atagccggcaagcccttaccccaaaa 71
||||||||||| |||||||||||| ||| || |||||||| |||||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgtacataactcgatagccgg-aagcccttaccccaaaa 59
Query: 72 agca 75
||||
Sbjct: 60 agca 63
>27018_eca-mir-129a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>27019_eca-mir-129a:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>27379_mdo-mir-129:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>27725_mml-mir-129:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>27726_mml-mir-129:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>28439_hsa-mir-129-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>30216_ptr-mir-129-1:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 2 atctttttgcggtctgggcttgctgttc 29
>30825_ppy-mir-129-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>31852_mmu-mir-129-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>31853_mmu-mir-129-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 4 atctttttgcggtctgggcttgctgttc 31
>33208_bta-mir-129-1:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 3 atctttttgcggtctgggcttgctgttc 30
>33978_ssc-mir-129b:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 atctttttgcggtttgggcttgctgttc 40
||||||||||||| ||||||||||||||
Sbjct: 9 atctttttgcggtctgggcttgctgttc 36
>32729_rno-mir-129-1:mirbase
Length = 72
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tctttttgcggtttgggcttgctgttc 40
|||||||||||| ||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttc 31
>34287_dre-mir-129-1:mirbase
Length = 90
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tctttttgcggtttgggcttgctgttc 40
|||||||||||| ||||||||||||||
Sbjct: 13 tctttttgcggtctgggcttgctgttc 39
>34594_fru-mir-129-2:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tctttttgcggtttgggcttgctgttc 40
|||||||||||| ||||||||||||||
Sbjct: 5 tctttttgcggtctgggcttgctgttc 31
>34741_tni-mir-129-2:mirbase
Length = 71
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 14 tctttttgcggtttgggcttgctgttc 40
|||||||||||| ||||||||||||||
Sbjct: 4 tctttttgcggtctgggcttgctgttc 30
>25771_xtr-mir-129-2:mirbase
Length = 82
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ctttttgcggtttgggcttgctgttc 40
||||||||||| ||||||||||||||
Sbjct: 9 ctttttgcggtctgggcttgctgttc 34
>26696_cfa-mir-129-1:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 ctttttgcggtttgggcttgctgttc 40
||||||||||| ||||||||||||||
Sbjct: 1 ctttttgcggtctgggcttgctgttc 26
