miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25947_gga-mir-130a:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 13 agccctttttgtgttgtactactgtccgctatggtgctgagcagtgcaatattaaaaagg 72
|||||||||| ||||||||||||| || || || |||||||||||||||| ||||||
Sbjct: 14 agccctttttctgttgtactactg---gcaattatgatgagcagtgcaatatt-aaaagg 69
Query: 73 gcattggctggcag 86
||||||||||||||
Sbjct: 70 gcattggctggcag 83
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 63.9 bits (32), Expect = 2e-11
Identities = 65/74 (87%), Gaps = 4/74 (5%)
Strand = Plus / Plus
Query: 13 agccctttttgtgttgtactactgtccgctatggtgctgagcagtgcaatattaaaaagg 72
|||||||||| ||||||||||||| || || || |||||||||||||||| ||||||
Sbjct: 3 agccctttttctgttgtactactg---gcaattatgatgagcagtgcaatatt-aaaagg 58
Query: 73 gcattggctggcag 86
||||||||||||||
Sbjct: 59 gcattggctggcag 72
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 50.1 bits (25), Expect = 3e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 46 tgagcagtgcaatatt-aaaagggcattggctg 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 14 gccctttttgtgttgtactactgt 37
||||||||| ||||||||||||||
Sbjct: 13 gccctttttctgttgtactactgt 36
>34595_fru-mir-130:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggctg 82
|||||||||||||||| ||||||||||||||||
Sbjct: 48 tgagcagtgcaatatt-aaaagggcattggctg 79
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 51 gagcagtgcaatattaaaaagggcattggctg 82
||||||||||||||| ||||||||||||||||
Sbjct: 77 gagcagtgcaatatt-aaaagggcattggctg 107
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 gccctttttgtgttgtactactg 36
||||||||| |||||||||||||
Sbjct: 43 gccctttttctgttgtactactg 65
>34742_tni-mir-130:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 30/31 (96%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 50 tgagcagtgcaatattaaaaagggcattggc 80
|||||||||||||||| ||||||||||||||
Sbjct: 45 tgagcagtgcaatatt-aaaagggcattggc 74
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 44.1 bits (22), Expect = 2e-05
Identities = 29/30 (96%), Gaps = 1/30 (3%)
Strand = Plus / Plus
Query: 52 agcagtgcaatattaaaaagggcattggct 81
|||||||||||||| |||||||||||||||
Sbjct: 43 agcagtgcaatatt-aaaagggcattggct 71
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 gccctttttgtgttgtactactg 36
||||||||| |||||||||||||
Sbjct: 8 gccctttttctgttgtactactg 30
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 14 gccctttttgtgttgtactactg 36
||||||||| |||||||||||||
Sbjct: 40 gccctttttatgttgtactactg 62
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 52 agcagtgcaatattaaaaagggcattggctg 82
||||||||||| | |||||||||||||||||
Sbjct: 47 agcagtgcaatgt-aaaaagggcattggctg 76
>33211_bta-mir-130a:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 29/31 (93%), Gaps = 1/31 (3%)
Strand = Plus / Plus
Query: 52 agcagtgcaatattaaaaagggcattggctg 82
||||||||||| |||||| ||||||||||||
Sbjct: 53 agcagtgcaatgttaaaa-gggcattggctg 82
