miRNEST 2.0, an integrative microRNA resource :: BLAST
>42465_sof-MIR408d:mirbase
Length = 215
Score = 394 bits (199), Expect = e-111
Identities = 199/199 (100%)
Strand = Plus / Plus
Query: 1 tgtttgattggagacagggacgaggcagagcatgggatggggccatcaacaaaatttcca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tgtttgattggagacagggacgaggcagagcatgggatggggccatcaacaaaatttcca 68
Query: 61 atttccgtttgcttgctcacaaaacgaaggtgcctgcctccctggtgatggcctgacctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 69 atttccgtttgcttgctcacaaaacgaaggtgcctgcctccctggtgatggcctgacctg 128
Query: 121 agagggctgagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 agagggctgagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctct 188
Query: 181 tccctggctccccaccgtt 199
|||||||||||||||||||
Sbjct: 189 tccctggctccccaccgtt 207
>42474_ssp-MIR408d:mirbase
Length = 180
Score = 357 bits (180), Expect = 2e-99
Identities = 180/180 (100%)
Strand = Plus / Plus
Query: 11 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttccgttt 70
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttccgttt 60
Query: 71 gcttgctcacaaaacgaaggtgcctgcctccctggtgatggcctgacctgagagggctga 130
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 gcttgctcacaaaacgaaggtgcctgcctccctggtgatggcctgacctgagagggctga 120
Query: 131 gagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggctc 190
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 gagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggctc 180
>42464_sof-MIR408c:mirbase
Length = 286
Score = 184 bits (93), Expect = 2e-47
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 103 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
Query: 163 cacccctgcactgcctcttccctggctccccaccgtt 199
| |||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcccctgcactgcctcttccctggctccccaccgtt 278
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 8 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 atttccgtttgcttgctcacaaaacg 86
||||| ||||||||||||||||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacg 123
>42463_sof-MIR408b:mirbase
Length = 286
Score = 184 bits (93), Expect = 2e-47
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 103 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 182 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 241
Query: 163 cacccctgcactgcctcttccctggctccccaccgtt 199
| |||||||||||||||||||||||||||||||||||
Sbjct: 242 ctcccctgcactgcctcttccctggctccccaccgtt 278
Score = 107 bits (54), Expect = 3e-24
Identities = 57/58 (98%)
Strand = Plus / Plus
Query: 8 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 65
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatggggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 gtttgcttgctcacaaaacg 86
||||||||||||||||||||
Sbjct: 104 gtttgcttgctcacaaaacg 123
>42462_sof-MIR408a:mirbase
Length = 283
Score = 149 bits (75), Expect = 9e-37
Identities = 92/97 (94%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 103 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 162
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 182 tggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttc 238
Query: 163 cacccctgcactgcctcttccctggctccccaccgtt 199
| |||||||||||||||||||||||||||||||||||
Sbjct: 239 ctcccctgcactgcctcttccctggctccccaccgtt 275
Score = 99.6 bits (50), Expect = 8e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 8 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 65
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 atttccgtttgcttgctcacaaaacg 86
||||| ||||||||||||||||||||
Sbjct: 98 atttctgtttgcttgctcacaaaacg 123
>42473_ssp-MIR408a:mirbase
Length = 248
Score = 131 bits (66), Expect = 2e-31
Identities = 83/88 (94%), Gaps = 3/88 (3%)
Strand = Plus / Plus
Query: 103 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 162
||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||
Sbjct: 164 tggtgatggcctgacctgagacggctgagagctcagctggtgtcc---tgttgttgcttc 220
Query: 163 cacccctgcactgcctcttccctggctc 190
| ||||||||||||||||||||||||||
Sbjct: 221 ctcccctgcactgcctcttccctggctc 248
Score = 93.7 bits (47), Expect = 5e-20
Identities = 53/55 (96%)
Strand = Plus / Plus
Query: 11 gagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 65
|||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1 gagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 55
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 61 atttccgtttgcttgctcacaaaacg 86
||||| ||||||||||||||||||||
Sbjct: 80 atttctgtttgcttgctcacaaaacg 105
>42466_sof-MIR408e:mirbase
Length = 283
Score = 117 bits (59), Expect = 3e-27
Identities = 88/97 (90%), Gaps = 3/97 (3%)
Strand = Plus / Plus
Query: 103 tggtgatggcctgacctgagagggctgagagctcagctggtgtcctggtgttgttgcttc 162
||||||||||||||||||||| || |||||||||||||||||||| |||||||||||
Sbjct: 182 tggtgatggcctgacctgagacggatgagagctcagctggtgtcc---tgttgttgctta 238
Query: 163 cacccctgcactgcctcttccctggctccccaccgtt 199
| |||||||||| |||||||||||||||||||||||
Sbjct: 239 cttccctgcactgactcttccctggctccccaccgtt 275
Score = 99.6 bits (50), Expect = 8e-22
Identities = 56/58 (96%)
Strand = Plus / Plus
Query: 8 ttggagacagggacgaggcagagcatgggatggggccatcaacaaaatttccaatttc 65
||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgaggcagagcatgggatgaggccatcaacaaaatttccaatttc 73
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 67 gtttgcttgctcacaaaacg 86
||||||||||||||||||||
Sbjct: 104 gtttgcttgctcacaaaacg 123
>42600_sbi-MIR408:mirbase
Length = 205
Score = 113 bits (57), Expect = 5e-26
Identities = 60/61 (98%)
Strand = Plus / Plus
Query: 129 gagagctcagctggtgtcctggtgttgttgcttccacccctgcactgcctcttccctggc 188
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 145 gagagctcagctggtgtcctggtgttgttgcttcctcccctgcactgcctcttccctggc 204
Query: 189 t 189
|
Sbjct: 205 t 205
Score = 111 bits (56), Expect = 2e-25
Identities = 70/74 (94%), Gaps = 3/74 (4%)
Strand = Plus / Plus
Query: 14 acagggacgaggcagagcatgggatggggccat---caacaaaatttccaatttccgttt 70
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1 acagggacgaggcagagcatgggatggggccatcaacaacaaaatttccaatttccgttt 60
Query: 71 gcttgctcacaaaa 84
|||||| |||||||
Sbjct: 61 gcttgcccacaaaa 74
>42829_zma-MIR408:mirbase
Length = 191
Score = 75.8 bits (38), Expect = 1e-14
Identities = 44/46 (95%)
Strand = Plus / Plus
Query: 8 ttggagacagggacgaggcagagcatgggatggggccatcaacaaa 53
||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 16 ttggagacagggatgagacagagcatgggatggggccatcaacaaa 61
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 150 gtgttgttgcttccacccctgcactgcctcttccctggctcc 191
||||||||||| || |||||||||||||||||||||||||||
Sbjct: 134 gtgttgttgctccctcccctgcactgcctcttccctggctcc 175
>42052_osa-MIR408:mirbase
Length = 213
Score = 69.9 bits (35), Expect = 7e-13
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 151 tgttgttgcttccacccctgcactgcctcttccctggctcccc 193
|||||||||| || |||||||||||||||||||||||||||||
Sbjct: 136 tgttgttgctccctcccctgcactgcctcttccctggctcccc 178
Score = 67.9 bits (34), Expect = 3e-12
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 10 ggagacagggacgaggcagagcatgggatggggccatcaaca 51
||||||||||| |||||||||||||||||||||| |||||||
Sbjct: 26 ggagacagggatgaggcagagcatgggatggggctatcaaca 67
>42830_zma-MIR408b:mirbase
Length = 147
Score = 61.9 bits (31), Expect = 2e-10
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 152 gttgttgcttccacccctgcactgcctcttccctggctc 190
||||||||| || ||||||||||||||||||||||||||
Sbjct: 109 gttgttgctccctcccctgcactgcctcttccctggctc 147
Score = 58.0 bits (29), Expect = 3e-09
Identities = 42/45 (93%), Gaps = 1/45 (2%)
Strand = Plus / Plus
Query: 13 gacagggacgaggcagagcatggg-atggggccatcaacaaaatt 56
|||||||||||||||||||||||| | ||||||||||||| ||||
Sbjct: 1 gacagggacgaggcagagcatgggtagggggccatcaacagaatt 45
>42647_tae-MIR408:mirbase
Length = 187
Score = 56.0 bits (28), Expect = 1e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 166 ccctgcactgcctcttccctggctcccc 193
||||||||||||||||||||||||||||
Sbjct: 134 ccctgcactgcctcttccctggctcccc 161
Score = 40.1 bits (20), Expect = 6e-04
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 10 ggagacagggacgaggcagagcatgggatggggccatcaacaaaattt 57
||||||||||| | |||||||| |||||| ||| | |||||||||||
Sbjct: 24 ggagacagggatggagcagagcaagggatgaggcaagcaacaaaattt 71
>40391_rco-MIR408:mirbase
Length = 92
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 164 acccctgcactgcctcttccctggct 189
||||||||||||||||||||||||||
Sbjct: 63 acccctgcactgcctcttccctggct 88
>40108_ath-MIR408:mirbase
Length = 218
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 164 acccctgcactgcctcttccctggctccc 192
|||| ||||||||||||||||||||||||
Sbjct: 116 acccatgcactgcctcttccctggctccc 144
>39897_aly-MIR408:mirbase
Length = 211
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 164 acccctgcactgcctcttccctggctccc 192
|||| ||||||||||||||||||||||||
Sbjct: 113 acccatgcactgcctcttccctggctccc 141
>41683_vvi-MIR408:mirbase
Length = 107
Score = 46.1 bits (23), Expect = 1e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 164 acccctgcactgcctcttccctggctc 190
|||| ||||||||||||||||||||||
Sbjct: 73 acccatgcactgcctcttccctggctc 99
>41463_ptc-MIR408:mirbase
Length = 105
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 164 acccctgcactgcctcttccctggct 189
|||| |||||||||||||||||||||
Sbjct: 72 acccatgcactgcctcttccctggct 97
>41252_csi-MIR408:mirbase
Length = 153
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggctc 190
||||||||||||||||||||||
Sbjct: 121 tgcactgcctcttccctggctc 142
>40405_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggctc 190
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>40404_ahy-MIR408:mirbase
Length = 122
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggctc 190
||||||||||||||||||||||
Sbjct: 82 tgcactgcctcttccctggctc 103
>39428_pta-MIR408:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 4e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggctc 190
||||||||||||||||||||||
Sbjct: 65 tgcactgcctcttccctggctc 86
>41193_aqc-MIR408:mirbase
Length = 87
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 169 tgcactgcctcttccctggct 189
|||||||||||||||||||||
Sbjct: 21 tgcactgcctcttccctggct 1
>39742_smo-MIR408:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggct 189
|||||||||||||||||||||
Sbjct: 77 tgcactgcctcttccctggct 97
>39490_ppt-MIR408b:mirbase
Length = 144
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 169 tgcactgcctcttccctggct 189
|||||||||||||||||||||
Sbjct: 94 tgcactgcctcttccctggct 114
