miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>34309_dre-mir-140:mirbase
          Length = 105

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tcagtggttttaccctatggtag 31
          |||||||||||||||||||||||
Sbjct: 22 tcagtggttttaccctatggtag 44




>34602_fru-mir-140:mirbase
          Length = 67

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tcagtggttttaccctatggtag 31
          |||||||||||||||||||||||
Sbjct: 2  tcagtggttttaccctatggtag 24




>34749_tni-mir-140:mirbase
          Length = 67

 Score = 46.1 bits (23), Expect = 4e-06
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 9  tcagtggttttaccctatggtag 31
          |||||||||||||||||||||||
Sbjct: 2  tcagtggttttaccctatggtag 24




>25787_xtr-mir-140:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 18 cagtggttttaccctatggtag 39




>25961_gga-mir-140:mirbase
          Length = 95

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 21 cagtggttttaccctatggtag 42




>26472_tgu-mir-140:mirbase
          Length = 72

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 11 cagtggttttaccctatggtag 32




>26714_cfa-mir-140:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 1  cagtggttttaccctatggtag 22




>27038_eca-mir-140:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 2  cagtggttttaccctatggtag 23




>27039_eca-mir-140:mirbase
          Length = 61

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 2  cagtggttttaccctatggtag 23




>27388_mdo-mir-140:mirbase
          Length = 70

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 6  cagtggttttaccctatggtag 27




>27743_mml-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>27744_mml-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>28458_hsa-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>28459_hsa-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>30231_ptr-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>30842_ppy-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>30843_ppy-mir-140:mirbase
          Length = 100

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 23 cagtggttttaccctatggtag 44




>31498_oan-mir-140:mirbase
          Length = 123

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 35 cagtggttttaccctatggtag 56




>31872_mmu-mir-140:mirbase
          Length = 70

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 6  cagtggttttaccctatggtag 27




>32745_rno-mir-140:mirbase
          Length = 99

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 22 cagtggttttaccctatggtag 43




>33226_bta-mir-140:mirbase
          Length = 94

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 17 cagtggttttaccctatggtag 38




>33990_ssc-mir-140:mirbase
          Length = 70

 Score = 44.1 bits (22), Expect = 1e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 10 cagtggttttaccctatggtag 31
          ||||||||||||||||||||||
Sbjct: 6  cagtggttttaccctatggtag 27