miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25502_pma-mir-153-2:mirbase
Length = 76
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 6 gatgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtg 65
|||||||||||||||||||||| || |||| | || ||||||||||||||||||||||
Sbjct: 6 gatgtcatttttgtgatttgcaactcgttttacgtgtgaagttgcatagtcacaaaagtg 65
Query: 66 atcat 70
|||||
Sbjct: 66 atcat 70
>34324_dre-mir-153a:mirbase
Length = 81
Score = 65.9 bits (33), Expect = 4e-12
Identities = 61/69 (88%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgat-ttgcagctggtttcattagtaaagttgcatagtcacaaaagtga 66
||||||||||||||| |||||||| ||| || || ||||||||||||||||||||||
Sbjct: 10 tgtcatttttgtgatgttgcagctagttatatgagcccagttgcatagtcacaaaagtga 69
Query: 67 tcattggaa 75
|||||||||
Sbjct: 70 tcattggaa 78
>25972_gga-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 39 agttgcatagtcacaaaagtgatcattggaa 69
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>28311_ggo-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>30248_ptr-mir-153:mirbase
Length = 86
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>32760_rno-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>34004_ssc-mir-153:mirbase
Length = 87
Score = 61.9 bits (31), Expect = 6e-11
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
|||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattggaa 81
>26729_cfa-mir-153:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgga 74
||||||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcattgga 80
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 15 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 74
Query: 68 cattgg 73
||||||
Sbjct: 75 cattgg 80
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 15 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 74
Query: 68 cattgg 73
||||||
Sbjct: 75 cattgg 80
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 15 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 74
Query: 68 cattgg 73
||||||
Sbjct: 75 cattgg 80
>30861_ppy-mir-153:mirbase
Length = 90
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||| ||||||| || | | | | |||||||||||||||||||||||
Sbjct: 15 tgtcatttttgtgatctgcagctagtattctcactccagttgcatagtcacaaaagtgat 74
Query: 68 cattgg 73
||||||
Sbjct: 75 cattgg 80
>34755_tni-mir-153a:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 44 aagttgcatagtcacaaaagtgatcattgg 73
||||||||||||||||||||||||||||||
Sbjct: 43 aagttgcatagtcacaaaagtgatcattgg 72
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcattgg 80
>31508_oan-mir-153:mirbase
Length = 145
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||||||||
Sbjct: 94 agttgcatagtcacaaaagtgatcattgg 122
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagct 30
||||||||||||||| |||||||
Sbjct: 56 tgtcatttttgtgatctgcagct 78
>34608_fru-mir-153a:mirbase
Length = 71
Score = 58.0 bits (29), Expect = 9e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||||||||
Sbjct: 43 agttgcatagtcacaaaagtgatcattgg 71
>27056_eca-mir-153:mirbase
Length = 67
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattg 72
||||||||||||||||||||||||||||
Sbjct: 40 agttgcatagtcacaaaagtgatcattg 67
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattg 72
||||||||||||||||||||||||||||
Sbjct: 42 agttgcatagtcacaaaagtgatcattg 69
>31889_mmu-mir-153:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattg 72
||||||||||||||||||||||||||||
Sbjct: 42 agttgcatagtcacaaaagtgatcattg 69
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattggaa 75
||||||||||||||||||||||| |||||||
Sbjct: 51 agttgcatagtcacaaaagtgattattggaa 81
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 47 agttgcatagtcacaaaagtgatcat 72
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>34326_dre-mir-153c:mirbase
Length = 151
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtgat 67
||||||||||||||||||||||| || | || |||||||||||||||||| ||||
Sbjct: 42 tgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgat 101
Query: 68 cattgg 73
||||||
Sbjct: 102 cattgg 107
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||||||||| ||||
Sbjct: 39 agttgcatagtcacaaaagtgatcgttgg 67
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 9 gtcatttttgtgatttgcagct 30
||||||||||||||||||||||
Sbjct: 3 gtcatttttgtgatttgcagct 24
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatca 69
|||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatca 76
>34826_spu-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgat 67
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>38870_lgi-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgatc 68
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>38755_cte-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgatc 68
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>24838_cin-mir-153:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||| ||||||||||||||
Sbjct: 64 agttgcatagtaacaaaagtgatcat 89
>34609_fru-mir-153b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||| ||| ||||||
Sbjct: 48 agttgcatagtcacaaaaatgagcattgg 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagct 30
||||||||||||| |||||||||
Sbjct: 11 tgtcatttttgtggtttgcagct 33
>34756_tni-mir-153b:mirbase
Length = 86
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcattgg 73
|||||||||||||||||| ||| ||||||
Sbjct: 48 agttgcatagtcacaaaaatgagcattgg 76
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagct 30
||||||||||||| |||||||||
Sbjct: 11 tgtcatttttgtggtttgcagct 33
>34882_sko-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>34974_isc-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>35014_dpu-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>38118_bma-mir-153:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70
>34325_dre-mir-153b:mirbase
Length = 148
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcagct 30
||||||||||||| |||||||||
Sbjct: 42 tgtcatttttgtggtttgcagct 64
