miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25501_pma-mir-153-1:mirbase
Length = 76
Score = 73.8 bits (37), Expect = 2e-14
Identities = 58/65 (89%)
Strand = Plus / Plus
Query: 6 gatgtcatttttgtgatttgcaactcgttttacgtgtgaagttgcatagtcacaaaagtg 65
|||||||||||||||||||||| || |||| | || ||||||||||||||||||||||
Sbjct: 6 gatgtcatttttgtgatttgcagctggtttcattagtaaagttgcatagtcacaaaagtg 65
Query: 66 atcat 70
|||||
Sbjct: 66 atcat 70
>25503_pma-mir-153-3:mirbase
Length = 78
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcatcagagg 76
||||||||||||||||||||||||||| ||||
Sbjct: 47 agttgcatagtcacaaaagtgatcatcggagg 78
>34755_tni-mir-153a:mirbase
Length = 72
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 44 aagttgcatagtcacaaaagtgatcat 70
|||||||||||||||||||||||||||
Sbjct: 43 aagttgcatagtcacaaaagtgatcat 69
>25800_xtr-mir-153-1:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>25972_gga-mir-153:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>26480_tgu-mir-153-1:mirbase
Length = 72
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 39 agttgcatagtcacaaaagtgatcat 64
>26729_cfa-mir-153:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>27056_eca-mir-153:mirbase
Length = 67
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 40 agttgcatagtcacaaaagtgatcat 65
>27057_eca-mir-153-2:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 42 agttgcatagtcacaaaagtgatcat 67
>27401_mdo-mir-153-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcat 77
>27402_mdo-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>27763_mml-mir-153-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcat 77
>27764_mml-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>28218_mne-mir-153-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcat 77
>28219_mne-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>28311_ggo-mir-153:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>28480_hsa-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>28479_hsa-mir-153-1:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcat 77
>30248_ptr-mir-153:mirbase
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>30861_ppy-mir-153:mirbase
Length = 90
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatcat 77
>30862_ppy-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>31508_oan-mir-153:mirbase
Length = 145
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 94 agttgcatagtcacaaaagtgatcat 119
>31889_mmu-mir-153:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 42 agttgcatagtcacaaaagtgatcat 67
>32760_rno-mir-153:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>33241_bta-mir-153-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>34004_ssc-mir-153:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgatcat 76
>34324_dre-mir-153a:mirbase
Length = 81
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 48 agttgcatagtcacaaaagtgatcat 73
>34608_fru-mir-153a:mirbase
Length = 71
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||||||||||||||||||
Sbjct: 43 agttgcatagtcacaaaagtgatcat 68
>33240_bta-mir-153-1:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatca 69
|||||||||||||||||||||||||
Sbjct: 52 agttgcatagtcacaaaagtgatca 76
>26481_tgu-mir-153-2:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatc 68
||||||||||||||||||||||||
Sbjct: 39 agttgcatagtcacaaaagtgatc 62
>25801_xtr-mir-153-2:mirbase
Length = 86
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgat 67
|||||||||||||||||||||||
Sbjct: 51 agttgcatagtcacaaaagtgat 73
>34326_dre-mir-153c:mirbase
Length = 151
Score = 46.1 bits (23), Expect = 3e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 8 tgtcatttttgtgatttgcaactcgttttacgtgtgaagttgcatagtcacaaaagtgat 67
|||||||||||||||||||| || || | | || |||||||||||||||||| ||||
Sbjct: 42 tgtcatttttgtgatttgcagctagtagtctgggtccagttgcatagtcacaaaaatgat 101
Query: 68 cat 70
|||
Sbjct: 102 cat 104
>34826_spu-mir-153:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgat 67
|||||||||||||||||||||||
Sbjct: 59 agttgcatagtcacaaaagtgat 81
>38870_lgi-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgatc 68
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>38755_cte-mir-153:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgatc 68
||||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgatc 82
>24838_cin-mir-153:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 45 agttgcatagtcacaaaagtgatcat 70
||||||||||| ||||||||||||||
Sbjct: 64 agttgcatagtaacaaaagtgatcat 89
>34882_sko-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>34974_isc-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>35014_dpu-mir-153:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 61 ttgcatagtcacaaaagtgat 81
>38118_bma-mir-153:mirbase
Length = 90
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 ttgcatagtcacaaaagtgat 67
|||||||||||||||||||||
Sbjct: 50 ttgcatagtcacaaaagtgat 70
