miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32769_rno-mir-183:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 cctgccctgtctatggcactggtagaattcactgt 38
|||| ||||| ||||||||||||||||||||||||
Sbjct: 16 cctgtcctgtgtatggcactggtagaattcactgt 50
>33041_rno-mir-3553:mirbase
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 4 cctgccctgtctatggcactggtagaattcactgt 38
|||| ||||| ||||||||||||||||||||||||
Sbjct: 92 cctgtcctgtgtatggcactggtagaattcactgt 58
>24687_bfl-mir-183:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 6e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 12 gtctatggcactggtagaattcactg 37
||||||||||||||||||||||||||
Sbjct: 18 gtctatggcactggtagaattcactg 43
>25808_xtr-mir-183:mirbase
Length = 97
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 14 ctgtgtatggcactggtagaattcactgt 42
>25978_gga-mir-183:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtgtatggcactggtagaattcactgt 38
>27064_eca-mir-183:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>27407_mdo-mir-183:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 10 ctgtgtatggcactggtagaattcactgt 38
>27621_sla-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>27774_mml-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>28224_mne-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>28317_ggo-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>28490_hsa-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>30106_ppa-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>30258_ptr-mir-183:mirbase
Length = 110
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 22 ctgtgtatggcactggtagaattcactgt 50
>30872_ppy-mir-183:mirbase
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 19 ctgtgtatggcactggtagaattcactgt 47
>31514_oan-mir-183:mirbase
Length = 131
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 26 ctgtgtatggcactggtagaattcactgt 54
>31899_mmu-mir-183:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>33251_bta-mir-183:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>34013_ssc-mir-183:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>34334_dre-mir-183:mirbase
Length = 98
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 11 ctgtgtatggcactggtagaattcactgt 39
>34615_fru-mir-183:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>34762_tni-mir-183:mirbase
Length = 70
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 ctgtctatggcactggtagaattcactgt 38
|||| ||||||||||||||||||||||||
Sbjct: 1 ctgtgtatggcactggtagaattcactgt 29
>26738_cfa-mir-183:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggcactggtagaattcactgt 38
||||||||||||||||||||||||
Sbjct: 1 tatggcactggtagaattcactgt 24
>24843_cin-mir-183:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tatggcactggtagaattcactg 37
|||||||||||||||||||||||
Sbjct: 16 tatggcactggtagaattcactg 38
>38871_lgi-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 tggcactggtagaattcactg 37
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38756_cte-mir-182:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 17 tggcactggtagaattcactg 37
|||||||||||||||||||||
Sbjct: 23 tggcactggtagaattcactg 43
>38872_lgi-mir-183:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 16 atggcactggtagaattcac 35
||||||||||||||||||||
Sbjct: 22 atggcactggtagaattcac 41
