miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 4 agtgtgcatcaggtgtaacagcaactccatgtgga 38
|||||| ||||||||||||||||||||||||||||
Sbjct: 2 agtgtgtatcaggtgtaacagcaactccatgtgga 36
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 60.0 bits (30), Expect = 3e-10
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 10 catcaggtgtaacagcaactccatgtggatgttccatcgctcccagtggagttactgtta 69
||||| ||||||||||||||||||||||| | || | ||||||||||| | ||||||
Sbjct: 8 catcacgtgtaacagcaactccatgtggactgtgcacagatcccagtggagctgctgtta 67
Query: 70 cttttgatgg 79
||||||||||
Sbjct: 68 cttttgatgg 77
>25667_xla-mir-194:mirbase
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 4 agtgtgcatcaggtgtaacagcaactccatgtgga 38
|||||| ||| ||||||||||||||||||||||||
Sbjct: 2 agtgtgtatcgggtgtaacagcaactccatgtgga 36
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 10 catcaggtgtaacagcaactccatgtgga 38
||||| |||||||||||||||||||||||
Sbjct: 8 catcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>27514_age-mir-194:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>28228_mne-mir-194:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>28321_ggo-mir-194:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>30269_ptr-mir-194:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 51 ccagtggagatgctgttacttttgatgg 78
>30885_ppy-mir-194:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 11 atcaggtgtaacagcaactccatgtgga 38
|||| |||||||||||||||||||||||
Sbjct: 9 atcaagtgtaacagcaactccatgtgga 36
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 ggtgtaacagcaactccatgtgga 38
||||||||||||||||||||||||
Sbjct: 5 ggtgtaacagcaactccatgtgga 28
>26750_cfa-mir-194:mirbase
Length = 58
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtggat 39
|||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtggat 23
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtggat 39
|||||||||||||||||||||||
Sbjct: 22 tgtaacagcaactccatgtggat 44
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>25984_gga-mir-194:mirbase
Length = 75
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 14 tgtaacagcaactccatgtgga 35
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 45 ccagtggagatgctgttacttttgatgg 72
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 45 ccagtggagatgctgttacttttgatgg 72
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 21 tgtaacagcaactccatgtgga 42
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 52 ccagtggagttactgttacttttgatgg 79
||||||||| | ||||||||||||||||
Sbjct: 57 ccagtggagatgctgttacttttgatgg 84
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34621_fru-mir-194:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 8 tgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 17 tgtaacagcaactccatgtgga 38
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
>34023_ssc-mir-194:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 10 catcaggtgtaacagcaactccatgtgga 38
|||||| ||||||||| ||||||||||||
Sbjct: 4 catcagctgtaacagcgactccatgtgga 32
>34024_ssc-mir-194:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 10 catcaggtgtaacagcaactccatgtgga 38
|||||| ||||||||| ||||||||||||
Sbjct: 4 catcagctgtaacagcgactccatgtgga 32
