miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttgggg 33
|||||| |||||||||||||||||||||||
Sbjct: 9 cgtggtttaggtagtttcatgttgttgggg 38
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggggt 34
||||| ||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggggt 34
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttgggg 33
|||||| |||||||||||||||||||||||
Sbjct: 9 cgtggtttaggtagtttcatgttgttgggg 38
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggggt 34
||||| ||||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggggt 34
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttgggg 33
||||| |||||||||||||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttgggg 38
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttggg 32
|||||| ||||||||||||||||||||||
Sbjct: 14 cgtggtttaggtagtttcatgttgttggg 42
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 19 gtggtttaggtagtttcatgttgttggg 46
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 18 gtggtttaggtagtttcatgttgttggg 45
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| ||||||||||||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>34350_dre-mir-196c:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 9e-07
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttggggtt 35
|||||| |||||||||| ||||||||||||||
Sbjct: 16 cgtggtttaggtagtttgatgttgttggggtt 47
>25985_gga-mir-196-1:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggggttta 37
|||||||||||||||||||||| ||||
Sbjct: 24 taggtagtttcatgttgttgggcttta 50
>26752_cfa-mir-196a-1:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 15 taggtagtttcatgttgttggg 36
>26753_cfa-mir-196a-2:mirbase
Length = 59
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 1 taggtagtttcatgttgttggg 22
>27080_eca-mir-196a:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 7 taggtagtttcatgttgttggg 28
>27515_age-mir-196:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>27580_lla-mir-196:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>27790_mml-mir-196a-1:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 7 taggtagtttcatgttgttggg 28
>27791_mml-mir-196a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>28323_ggo-mir-196-1:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 7 taggtagtttcatgttgttggg 28
>28324_ggo-mir-196-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>28507_hsa-mir-196a-1:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 7 taggtagtttcatgttgttggg 28
>28508_hsa-mir-196a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>30112_ppa-mir-196:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>30271_ptr-mir-196a-1:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 6 taggtagtttcatgttgttggg 27
>30272_ptr-mir-196a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>30887_ppy-mir-196-1:mirbase
Length = 70
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 7 taggtagtttcatgttgttggg 28
>30888_ppy-mir-196-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>31525_oan-mir-196a:mirbase
Length = 114
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 29 taggtagtttcatgttgttggg 50
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>31916_mmu-mir-196a-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 16 taggtagtttcatgttgttggg 37
>32783_rno-mir-196a:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 25 taggtagtttcatgttgttggg 46
>33268_bta-mir-196a-1:mirbase
Length = 102
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 24 taggtagtttcatgttgttggg 45
>33269_bta-mir-196a-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 16 taggtagtttcatgttgttggg 37
>34026_ssc-mir-196a:mirbase
Length = 107
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttggg 32
||||||||||||||||||||||
Sbjct: 22 taggtagtttcatgttgttggg 43
>25516_pma-mir-196b:mirbase
Length = 77
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtctaggtagtttcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 4 cgtggtgtaggtagtatcatgttgttggg 32
>25817_xtr-mir-196b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtctaggtagtttcatgttgttggg 32
||||| |||||||||| |||||||||||
Sbjct: 10 gtggtttaggtagttttatgttgttggg 37
>27416_mdo-mir-196b:mirbase
Length = 86
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
||||||||||| |||||||||||
Sbjct: 16 taggtagtttcctgttgttgggg 38
>31526_oan-mir-196b:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 11 taggtagtttcatgttgttgggg 33
||||||||||| |||||||||||
Sbjct: 16 taggtagtttcctgttgttgggg 38
