miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25515_pma-mir-196a:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 4 cgtggtctaggtagtttcatgttgttggg 32
>34347_dre-mir-196a-1:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 14 cgtggtttaggtagtttcatgttgttggg 42
>34622_fru-mir-196a-1:mirbase
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 9 cgtggtttaggtagtttcatgttgttggg 37
>34769_tni-mir-196a-1:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 4 cgtggtgtaggtagtatcatgttgttggg 32
|||||| |||||||| |||||||||||||
Sbjct: 9 cgtggtttaggtagtttcatgttgttggg 37
>25816_xtr-mir-196a:mirbase
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 19 gtggtttaggtagtttcatgttgttggg 46
>25986_gga-mir-196-2:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 10 gtggtttaggtagtttcatgttgttggg 37
>25987_gga-mir-196-3:mirbase
Length = 108
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 18 gtggtttaggtagtttcatgttgttggg 45
>34348_dre-mir-196a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>34623_fru-mir-196a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>34770_tni-mir-196a-2:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 5 gtggtgtaggtagtatcatgttgttggg 32
||||| |||||||| |||||||||||||
Sbjct: 5 gtggtttaggtagtttcatgttgttggg 32
>31915_mmu-mir-196a-1:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 10 gtaggtagtatcatgttgttggg 32
||||||||| |||||||||||||
Sbjct: 23 gtaggtagtttcatgttgttggg 45
