miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31529_oan-mir-200b:mirbase
Length = 109
Score = 56.0 bits (28), Expect = 4e-09
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatggtggccgc 75
|||||||||||||||||||||||| |||||||
Sbjct: 58 ttctaatactgcctggtaatgatgatggccgc 89
>25821_xtr-mir-200b:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 50 ttctaatactgcctggtaatgatg 73
>25992_gga-mir-200b:mirbase
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 43 ttctaatactgcctggtaatgatg 66
>27419_mdo-mir-200b:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 36 ttctaatactgcctggtaatgatg 59
>34356_dre-mir-200b:mirbase
Length = 82
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 47 ttctaatactgcctggtaatgatg 70
>34776_tni-mir-200b:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 44 ttctaatactgcctggtaatgatg 67
||||||||||||||||||||||||
Sbjct: 36 ttctaatactgcctggtaatgatg 59
>26499_tgu-mir-200b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 39 tctaatactgcctggtaatgatg 61
>26760_cfa-mir-200b:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatgatg 65
>27088_eca-mir-200b:mirbase
Length = 69
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 42 tctaatactgcctggtaatgatg 64
>28519_hsa-mir-200b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 55 tctaatactgcctggtaatgatg 77
>31924_mmu-mir-200b:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 43 tctaatactgcctggtaatgatg 65
>32789_rno-mir-200b:mirbase
Length = 95
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 55 tctaatactgcctggtaatgatg 77
>33279_bta-mir-200b:mirbase
Length = 59
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 36 tctaatactgcctggtaatgatg 58
>34357_dre-mir-200c:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 49 tctaatactgcctggtaatgatg 71
>34629_fru-mir-200b:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||||||||||||||||
Sbjct: 48 tctaatactgcctggtaatgatg 70
>24692_bfl-mir-200a:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 43 attctaatactgcctggtaatgatg 67
|||| ||||||||||||||||||||
Sbjct: 56 attcaaatactgcctggtaatgatg 80
>25332_csa-mir-200:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 taatactgcctggtaatgatg 67
|||||||||||||||||||||
Sbjct: 44 taatactgcctggtaatgatg 64
>33069_rno-mir-3575:mirbase
Length = 115
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 45 tctaatactgcctggtaatgatggtggcc 73
|||||||||||| ||||||||||| ||||
Sbjct: 54 tctaatactgccgggtaatgatggaggcc 26
>24848_cin-mir-200:mirbase
Length = 86
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatg 64
||||||||||||||||||||
Sbjct: 48 tctaatactgcctggtaatg 67
>24868_cin-mir-3575:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 tctaatactgcctggtaatg 64
||||||||||||||||||||
Sbjct: 25 tctaatactgcctggtaatg 6
>24869_cin-mir-3575:mirbase
Length = 60
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 45 tctaatactgcctggtaatg 64
||||||||||||||||||||
Sbjct: 25 tctaatactgcctggtaatg 6
>26761_cfa-mir-200c:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 39 tctaatactgccgggtaatgatgg 62
>27089_eca-mir-200c:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 40 tctaatactgccgggtaatgatgg 63
>27420_mdo-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 42 tctaatactgccgggtaatgatgg 65
>27799_mml-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 42 tctaatactgccgggtaatgatgg 65
>28327_ggo-mir-200c:mirbase
Length = 67
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 41 tctaatactgccgggtaatgatgg 64
>28520_hsa-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 42 tctaatactgccgggtaatgatgg 65
>30898_ppy-mir-200c:mirbase
Length = 68
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 42 tctaatactgccgggtaatgatgg 65
>31925_mmu-mir-200c:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 43 tctaatactgccgggtaatgatgg 66
>32790_rno-mir-200c:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 43 tctaatactgccgggtaatgatgg 66
>33280_bta-mir-200c:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatgg 68
|||||||||||| |||||||||||
Sbjct: 39 tctaatactgccgggtaatgatgg 62
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatg 64
||||||||||||||||||||
Sbjct: 65 tctaatactgcctggtaatg 84
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 9e-04
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 41 gaattctaatactgcctggtaatgatg 67
|||| ||||||||| ||||||||||||
Sbjct: 53 gaatactaatactgtctggtaatgatg 79
>34889_sko-mir-200:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 9e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 45 tctaatactgcctggtaatgatg 67
|||||||||| ||||||||||||
Sbjct: 59 tctaatactgtctggtaatgatg 81
