miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>34778_tni-mir-203:mirbase
Length = 74
Score = 83.8 bits (42), Expect = 2e-17
Identities = 54/58 (93%)
Strand = Plus / Plus
Query: 17 agtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccact 65
>27421_mdo-mir-203:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| || ||| |||||||||||||||||||||||
Sbjct: 13 ccagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccact 72
>34631_fru-mir-203:mirbase
Length = 74
Score = 75.8 bits (38), Expect = 5e-15
Identities = 53/58 (91%)
Strand = Plus / Plus
Query: 17 agtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| ||||||||||||||| || |||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccact 65
>26763_cfa-mir-203:mirbase
Length = 94
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 16 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 75
>27800_mml-mir-203:mirbase
Length = 110
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 25 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>28522_hsa-mir-203:mirbase
Length = 110
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 25 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 75 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 16
>29378_hsa-mir-3545:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 75 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 16
>30281_ptr-mir-203:mirbase
Length = 109
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 24 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 83
>30899_ppy-mir-203:mirbase
Length = 110
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 25 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>32793_rno-mir-203:mirbase
Length = 97
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 12 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 71
>33031_rno-mir-3545:mirbase
Length = 115
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 90 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 31
>33032_rno-mir-3545:mirbase
Length = 115
Score = 71.9 bits (36), Expect = 7e-14
Identities = 54/60 (90%)
Strand = Plus / Minus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| | ||||||||||||||| | | | ||||||||||||||||||||||||
Sbjct: 90 ccagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 31
>25521_pma-mir-203b:mirbase
Length = 90
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
>25824_xtr-mir-203:mirbase
Length = 74
Score = 69.9 bits (35), Expect = 3e-13
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 12 ggcccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggacc 71
|||| ||||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 4 ggccgagtggttcttaacagttcaacagttctctatcgaaattgtgaaatgtttaggacc 63
Query: 72 act 74
|||
Sbjct: 64 act 66
>26502_tgu-mir-203:mirbase
Length = 132
Score = 61.9 bits (31), Expect = 7e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 62 cagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggaccact 120
>34359_dre-mir-203a:mirbase
Length = 96
Score = 61.9 bits (31), Expect = 7e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | |||||||||||||||||||||||||
Sbjct: 31 cagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggaccact 89
>34360_dre-mir-203b:mirbase
Length = 85
Score = 61.9 bits (31), Expect = 7e-11
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 12 ggcccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggacc 71
|||| ||||||||||| ||||||||||||||||| || ||||||||||||| ||||||
Sbjct: 9 ggccgagtggttctcaacagttcaacagttcttttga-tgattgtgaaatgttcaggacc 67
Query: 72 act 74
|||
Sbjct: 68 act 70
>31929_mmu-mir-203:mirbase
Length = 76
Score = 56.0 bits (28), Expect = 4e-09
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 15 ccagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
||||||||||| ||||||||||||||| | | ||||||||||||||||||||||||
Sbjct: 8 ccagtggttcttgacagttcaacagttctgtagcacaattgtgaaatgtttaggaccact 67
>25994_gga-mir-203:mirbase
Length = 98
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 17 cagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggaccact 75
