miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25824_xtr-mir-203:mirbase
Length = 74
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccacttg 76
||||||||| | |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 9 agtggttcttaacagttcaacagttctctatcgaaattgtgaaatgtttaggaccacttg 68
Query: 77 a 77
|
Sbjct: 69 a 69
>25994_gga-mir-203:mirbase
Length = 98
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 14 gtgcagtggttcttaacagttcaacagttctctatcataattgtgaaatgtttaggacca 73
Query: 73 cttgac 78
||||||
Sbjct: 74 cttgac 79
>26502_tgu-mir-203:mirbase
Length = 132
Score = 83.8 bits (42), Expect = 2e-17
Identities = 60/66 (90%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | |||||||||||||||||| ||||||||||||||||||||||
Sbjct: 59 gtgcagtggttcttaacagttcaacagttctctagcataattgtgaaatgtttaggacca 118
Query: 73 cttgac 78
||||||
Sbjct: 119 cttgac 124
>30281_ptr-mir-203:mirbase
Length = 109
Score = 77.8 bits (39), Expect = 1e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccactt 75
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 25 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccacta 84
Query: 76 gactcgg 82
|||||||
Sbjct: 85 gactcgg 91
>34359_dre-mir-203a:mirbase
Length = 96
Score = 75.8 bits (38), Expect = 5e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 13 gtgcagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggacca 72
||||||||||||| | ||||||||||||||| | |||||||||||||||||||||||
Sbjct: 28 gtgcagtggttcttaacagttcaacagttctatctcaaaattgtgaaatgtttaggacca 87
Query: 73 cttgac 78
||||||
Sbjct: 88 cttgac 93
>25520_pma-mir-203a:mirbase
Length = 91
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 16 cagtggttctcatcagttcaacagttctttggagaaattgtgaaatgtttaggaccact 74
>26763_cfa-mir-203:mirbase
Length = 94
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 17 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 75
>27800_mml-mir-203:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>28522_hsa-mir-203:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>29377_hsa-mir-3545:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 74 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 16
>29378_hsa-mir-3545:mirbase
Length = 86
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 74 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 16
>30899_ppy-mir-203:mirbase
Length = 110
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 26 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 84
>32793_rno-mir-203:mirbase
Length = 97
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 13 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 71
>33031_rno-mir-3545:mirbase
Length = 115
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 89 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 31
>33032_rno-mir-3545:mirbase
Length = 115
Score = 69.9 bits (35), Expect = 3e-13
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| | ||||||||||||||| || | ||||||||||||||||||||||||
Sbjct: 89 cagtggttcttaacagttcaacagttctgtagcgcaattgtgaaatgtttaggaccact 31
>27421_mdo-mir-203:mirbase
Length = 81
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccactt 75
|||||||||| | ||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 14 cagtggttcttaacagttcaacagttctgtgtagagattgtgaaatgtttaggaccactt 73
Query: 76 ga 77
||
Sbjct: 74 ga 75
>34631_fru-mir-203:mirbase
Length = 74
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccacttg 76
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctatgagaaaattgtgaaatgtttaggaccacttg 67
Query: 77 ac 78
||
Sbjct: 68 ac 69
>34778_tni-mir-203:mirbase
Length = 74
Score = 67.9 bits (34), Expect = 1e-12
Identities = 55/62 (88%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccacttg 76
||||||||| | ||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 8 agtggttctcaacagttcaacagttctttgagaaaattgtgaaatgtttaggaccacttg 67
Query: 77 ac 78
||
Sbjct: 68 ac 69
>31929_mmu-mir-203:mirbase
Length = 76
Score = 54.0 bits (27), Expect = 2e-08
Identities = 51/59 (86%)
Strand = Plus / Plus
Query: 16 cagtggttctaaccagttcaacagttctctactgaaattgtgaaatgtttaggaccact 74
|||||||||| ||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 9 cagtggttcttgacagttcaacagttctgtagcacaattgtgaaatgtttaggaccact 67
>34360_dre-mir-203b:mirbase
Length = 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 54/62 (87%), Gaps = 3/62 (4%)
Strand = Plus / Plus
Query: 17 agtggttctaaccagttcaacagttctctactgaa-attgtgaaatgtttaggaccactt 75
||||||||| | ||||||||||||||| | ||| ||||||||||||| ||||||||||
Sbjct: 14 agtggttctcaacagttcaacagttcttt--tgatgattgtgaaatgttcaggaccactt 71
Query: 76 ga 77
||
Sbjct: 72 ga 73
