miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26777_cfa-mir-217:mirbase
Length = 82
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggatagtgatggattgccatcagttcttaatgcattg 66
||||||||||||||||||||||||||| |||| | |||||||||| ||||||||||
Sbjct: 12 gatactgcatcaggaactgattggataagaatgggtcaccatcagttcctaatgcattg 70
>34042_ssc-mir-217:mirbase
Length = 107
Score = 61.9 bits (31), Expect = 5e-11
Identities = 52/59 (88%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggatagtgatggattgccatcagttcttaatgcattg 66
||||||||||||||||||||||||||| || | | |||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggataagaattggtcaccatcagttcttaatgcattg 88
>25836_xtr-mir-217:mirbase
Length = 83
Score = 58.0 bits (29), Expect = 8e-10
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 1 tgttgtggatactgcatcaggaactgattggat 33
|||||| ||||||||||||||||||||||||||
Sbjct: 5 tgttgtagatactgcatcaggaactgattggat 37
>26006_gga-mir-217:mirbase
Length = 107
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 30 gatactgcatcaggaactgattggata 56
>26513_tgu-mir-217:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 9 gatactgcatcaggaactgattggata 35
>27431_mdo-mir-217:mirbase
Length = 82
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 12 gatactgcatcaggaactgattggata 38
>28333_ggo-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>28535_hsa-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>30120_ppa-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>30293_ptr-mir-217:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>30911_ppy-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>31537_oan-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 25 gatactgcatcaggaactgattggata 51
>33294_bta-mir-217:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||||||||||
Sbjct: 33 gatactgcatcaggaactgattggata 59
>34373_dre-mir-217-1:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggat 33
||||||||||||||||||||||||||
Sbjct: 23 gatactgcatcaggaactgattggat 48
>34374_dre-mir-217-2:mirbase
Length = 98
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggat 33
||||||||||||||||||||||||||
Sbjct: 23 gatactgcatcaggaactgattggat 48
>27101_eca-mir-217:mirbase
Length = 57
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 10 tactgcatcaggaactgattggata 34
|||||||||||||||||||||||||
Sbjct: 1 tactgcatcaggaactgattggata 25
>24697_bfl-mir-217:mirbase
Length = 68
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 10 tactgcatcaggaactgattggat 33
||||||||||||||||||||||||
Sbjct: 8 tactgcatcaggaactgattggat 31
>34639_fru-mir-217:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 25 gatactgcatcaggaactgattgg 48
>34787_tni-mir-217:mirbase
Length = 89
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
||||||||||||||||||||||||
Sbjct: 14 gatactgcatcaggaactgattgg 37
>27813_mml-mir-217:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 ctgcatcaggaactgattggata 34
|||||||||||||||||||||||
Sbjct: 37 ctgcatcaggaactgattggata 59
>31945_mmu-mir-217:mirbase
Length = 108
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||| ||||||
Sbjct: 32 gatactgcatcaggaactgactggata 58
>32809_rno-mir-217:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattggata 34
|||||||||||||||||||| ||||||
Sbjct: 30 gatactgcatcaggaactgactggata 56
>25335_csa-mir-217:mirbase
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 8 gatactgcatcaggaactgattgg 31
|||||||||| |||||||||||||
Sbjct: 14 gatactgcattaggaactgattgg 37
