miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>31946_mmu-mir-218-1:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgcttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>32810_rno-mir-218a-1:mirbase
Length = 110
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||||||||
Sbjct: 25 ttgtgcttgatctaaccatgtgcttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>32812_rno-mir-218b:mirbase
Length = 114
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||||||||
Sbjct: 86 ttgtgcttgatctaaccatgtgcttgc 60
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 48 aaaacatggttccgtcaagcaccatggaa 20
>25531_pma-mir-218a-1:mirbase
Length = 79
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 11 ccttgtgcttgatctaaccatgtgct 36
||||||||||||||||||||||||||
Sbjct: 11 ccttgtgcttgatctaaccatgtgct 36
>27585_lla-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>27627_sla-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>27815_mml-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>28239_mne-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>28537_hsa-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>30122_ppa-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>30295_ptr-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>30913_ppy-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>31539_oan-mir-218-2:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 4 gctttcctttgtgcttgatctaaccatgtg 33
>31947_mmu-mir-218-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>32811_rno-mir-218a-2:mirbase
Length = 110
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 17 gctttcctttgtgcttgatctaaccatgtg 46
>34044_ssc-mir-218b:mirbase
Length = 84
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 5 gctttcccttgtgcttgatctaaccatgtg 34
||||||| ||||||||||||||||||||||
Sbjct: 3 gctttcctttgtgcttgatctaaccatgtg 32
>34376_dre-mir-218a-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 7 tttcccttgtgcttgatctaaccatgtgcttgc 39
||||| |||||||||||||||||||||| ||||
Sbjct: 8 tttcctttgtgcttgatctaaccatgtggttgc 40
>25838_xtr-mir-218-2:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tttcccttgtgcttgatctaaccatgtg 34
||||| ||||||||||||||||||||||
Sbjct: 6 tttcctttgtgcttgatctaaccatgtg 33
>26008_gga-mir-218-2:mirbase
Length = 95
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tttcccttgtgcttgatctaaccatgtg 34
||||| ||||||||||||||||||||||
Sbjct: 6 tttcctttgtgcttgatctaaccatgtg 33
>26515_tgu-mir-218-2:mirbase
Length = 131
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 7 tttcccttgtgcttgatctaaccatgtg 34
||||| ||||||||||||||||||||||
Sbjct: 5 tttcctttgtgcttgatctaaccatgtg 32
>26778_cfa-mir-218-1:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgcc 40
|||||||||||||||||||||| |||||
Sbjct: 1 ttgtgcttgatctaaccatgtggttgcc 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcacca 80
||||||||||||| ||||||||||
Sbjct: 39 aaaacatggttccgtcaagcacca 62
>27102_eca-mir-218:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgcc 40
|||||||||||||||||||||| |||||
Sbjct: 1 ttgtgcttgatctaaccatgtggttgcc 28
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcacca 80
||||||||||||| ||||||||||
Sbjct: 39 aaaacatggttccgtcaagcacca 62
>31409_lca-mir-218:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgcc 40
|||||||||||||||||||||| |||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgcc 52
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>33295_bta-mir-218-1:mirbase
Length = 110
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgcc 40
|||||||||||||||||||||| |||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgcc 52
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>34043_ssc-mir-218:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgcc 40
|||||||||||||||||||||| |||||
Sbjct: 11 ttgtgcttgatctaaccatgtggttgcc 38
>34375_dre-mir-218a-1:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 12 cttgtgcttgatctaaccatgtgc 35
||||||||||||||||||||||||
Sbjct: 10 cttgtgcttgatctaaccatgtgc 33
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 60 acatggttccttcaagcaccaggga 84
|||||||||| ||||||||||||||
Sbjct: 53 acatggttccgtcaagcaccaggga 77
>27520_age-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>27584_lla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>27626_sla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>27814_mml-mir-218-1:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 20 ttgtgcttgatctaaccatgtggttgc 46
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 58 aaaacatggttccgtcaagcaccatggaa 86
>28238_mne-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>28334_ggo-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>28536_hsa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>30121_ppa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>30294_ptr-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>30912_ppy-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 25 ttgtgcttgatctaaccatgtggttgc 51
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 57 aaaacatggttccttcaagcaccagggaa 85
||||||||||||| |||||||||| ||||
Sbjct: 63 aaaacatggttccgtcaagcaccatggaa 91
>31538_oan-mir-218:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtgcttgc 39
|||||||||||||||||||||| ||||
Sbjct: 31 ttgtgcttgatctaaccatgtggttgc 57
>34640_fru-mir-218a-1:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 cttgtgcttgatctaaccatgtg 34
|||||||||||||||||||||||
Sbjct: 10 cttgtgcttgatctaaccatgtg 32
>34641_fru-mir-218a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttcccttgtgcttgatctaaccatgtg 34
|||| ||||||||||||||||||||||
Sbjct: 6 ttcctttgtgcttgatctaaccatgtg 32
>34788_tni-mir-218a-1:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 cttgtgcttgatctaaccatgtg 34
|||||||||||||||||||||||
Sbjct: 10 cttgtgcttgatctaaccatgtg 32
>34789_tni-mir-218a-2:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttcccttgtgcttgatctaaccatgtg 34
|||| ||||||||||||||||||||||
Sbjct: 6 ttcctttgtgcttgatctaaccatgtg 32
>25533_pma-mir-218b:mirbase
Length = 90
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 tttcccttgtgcttgatctaaccatg 32
||||| ||||||||||||||||||||
Sbjct: 9 tttccgttgtgcttgatctaaccatg 34
>25837_xtr-mir-218-1:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtg 45
>26007_gga-mir-218-1:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtg 45
>26514_tgu-mir-218-1:mirbase
Length = 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgtg 32
>26779_cfa-mir-218-2:mirbase
Length = 64
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtg 22
>27103_eca-mir-218-2:mirbase
Length = 63
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatgtg 22
>27432_mdo-mir-218:mirbase
Length = 109
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 24 ttgtgcttgatctaaccatgtg 45
>33296_bta-mir-218-2:mirbase
Length = 62
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatgtg 34
||||||||||||||||||||||
Sbjct: 2 ttgtgcttgatctaaccatgtg 23
>34377_dre-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatg 32
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34642_fru-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatg 32
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34790_tni-mir-218b:mirbase
Length = 76
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 ttgtgcttgatctaaccatg 32
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
