miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25838_xtr-mir-218-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 3 ggttttcctttgtgcttgatctaaccatg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 54 catggttctgtcaagcacca 73
>26008_gga-mir-218-2:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 3 ggttttcctttgtgcttgatctaaccatg 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 54 catggttctgtcaagcacca 73
>26515_tgu-mir-218-2:mirbase
Length = 131
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 2 ggttttcctttgtgcttgatctaaccatg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 53 catggttctgtcaagcacca 72
>34376_dre-mir-218a-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 ggttttccgttgtgcttgatctaaccatg 34
|||||||| ||||||||||||||||||||
Sbjct: 5 ggttttcctttgtgcttgatctaaccatg 33
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 56 catggttctgtcaagcacca 75
>25837_xtr-mir-218-1:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 17 ttttctgttgtgcttgatctaaccatg 43
>26007_gga-mir-218-1:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 17 ttttctgttgtgcttgatctaaccatg 43
>26514_tgu-mir-218-1:mirbase
Length = 111
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 4 ttttctgttgtgcttgatctaaccatg 30
>27432_mdo-mir-218:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 17 ttttctgttgtgcttgatctaaccatg 43
>27520_age-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>27584_lla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>27626_sla-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>27814_mml-mir-218-1:mirbase
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 13 ttttctgttgtgcttgatctaaccatg 39
>28238_mne-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>28334_ggo-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>28536_hsa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>30121_ppa-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>30294_ptr-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>30912_ppy-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>31409_lca-mir-218:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>31538_oan-mir-218:mirbase
Length = 118
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 24 ttttctgttgtgcttgatctaaccatg 50
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 73 catggttctgtcaagcacca 92
>31539_oan-mir-218-2:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcaccacgg 79
|||||||||||||||||||||||
Sbjct: 54 catggttctgtcaagcaccacgg 76
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 6 tttcctttgtgcttgatctaaccatg 31
>31946_mmu-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>32810_rno-mir-218a-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>32812_rno-mir-218b:mirbase
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 93 ttttctgttgtgcttgatctaaccatg 67
>33295_bta-mir-218-1:mirbase
Length = 110
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 18 ttttctgttgtgcttgatctaaccatg 44
>34043_ssc-mir-218:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 8 ttttccgttgtgcttgatctaaccatg 34
||||| |||||||||||||||||||||
Sbjct: 4 ttttctgttgtgcttgatctaaccatg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 53 catggttctgtcaagcacca 72
>25532_pma-mir-218a-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 7 tttcccttgtgcttgatctaaccatg 32
>27585_lla-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>27627_sla-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>27815_mml-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>28239_mne-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>28537_hsa-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>30122_ppa-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>30295_ptr-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>30913_ppy-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>31947_mmu-mir-218-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>32811_rno-mir-218a-2:mirbase
Length = 110
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 19 tttcctttgtgcttgatctaaccatg 44
>34044_ssc-mir-218b:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 tttccgttgtgcttgatctaaccatg 34
||||| ||||||||||||||||||||
Sbjct: 5 tttcctttgtgcttgatctaaccatg 30
>34377_dre-mir-218b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatgc 35
|||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgc 31
>34641_fru-mir-218a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ttccgttgtgcttgatctaaccatg 34
|||| ||||||||||||||||||||
Sbjct: 6 ttcctttgtgcttgatctaaccatg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 56 catggttctgtcaagcacca 75
>34642_fru-mir-218b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatgc 35
|||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgc 31
>34789_tni-mir-218a-2:mirbase
Length = 84
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ttccgttgtgcttgatctaaccatg 34
|||| ||||||||||||||||||||
Sbjct: 6 ttcctttgtgcttgatctaaccatg 30
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 57 catggttctgtcaagcacca 76
||||||||||||||||||||
Sbjct: 56 catggttctgtcaagcacca 75
>34790_tni-mir-218b:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatgc 35
|||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatgc 31
>25531_pma-mir-218a-1:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 13 ttgtgcttgatctaaccatg 32
>26778_cfa-mir-218-1:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatg 20
>26779_cfa-mir-218-2:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatg 20
>27102_eca-mir-218:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatg 20
>27103_eca-mir-218-2:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 1 ttgtgcttgatctaaccatg 20
>33296_bta-mir-218-2:mirbase
Length = 62
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 2 ttgtgcttgatctaaccatg 21
>34375_dre-mir-218a-1:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34640_fru-mir-218a-1:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
>34788_tni-mir-218a-1:mirbase
Length = 83
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 ttgtgcttgatctaaccatg 34
||||||||||||||||||||
Sbjct: 11 ttgtgcttgatctaaccatg 30
