miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25549_pma-mir-430d:mirbase
Length = 87
Score = 113 bits (57), Expect = 2e-26
Identities = 84/89 (94%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 2 attctgttcacgtttacagcaatttcgagcactctgcttcatttataatagcaagtgctt 61
||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
Sbjct: 2 attctgttcacgtttacagca-tttcgagcactctgcttaatttataatagcaagtgc-t 59
Query: 62 tgattttgttgtgtacgagaaacagacgc 90
||||||||||||| |||| ||||||||||
Sbjct: 60 tgattttgttgtgaacga-aaacagacgc 87
>25548_pma-mir-430c:mirbase
Length = 80
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/79 (93%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 4 tctgttcacgtttacagcaatttcgagcactctgcttcatttataatagcaagtgctttg 63
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 1 tctgttcacgtttacagcaatttcgagcactctgc-taatttataatagcaagtgc-ttg 58
Query: 64 attttgttgtgtacgagaa 82
| ||||||||| |||||||
Sbjct: 59 a-tttgttgtgaacgagaa 76
>25546_pma-mir-430a:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 3 ttctgttcacgtttacagcaatttcgagcactctgctt 40
||||| ||||||| ||||||| | ||||||||||||||
Sbjct: 3 ttctggtcacgttgacagcaactccgagcactctgctt 40
>25547_pma-mir-430b:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 7e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 4 tctgttcacgtttacagcaatttcgagcactctgctt 40
|||||||||||| ||| ||| ||||||| ||||||||
Sbjct: 2 tctgttcacgttcacaacaacttcgagcgctctgctt 38
