miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25544_pma-mir-375b:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 gcgcgctttgttcgttcggctcgcgttacgcaggc 87
||||| ||||||||||||||||||||| |||||||
Sbjct: 53 gcgcgttttgttcgttcggctcgcgttgcgcaggc 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 7 cgtctgcgtcacgccgagcccgacgcgcaatgc 39
|||||||| |||||||||||||||| ||||||
Sbjct: 7 cgtctgcgcaacgccgagcccgacgcacaatgc 39
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttacgcag 85
|||||||||||||||||||||||||||
Sbjct: 52 tttgttcgttcggctcgcgttacgcag 78
>25853_xtr-mir-375:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttacgcagg 86
|||||||||||||||||||||| |||||
Sbjct: 41 tttgttcgttcggctcgcgttaagcagg 68
>26528_tgu-mir-375:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttacgcagg 86
|||||||||||||||||||||| |||||
Sbjct: 41 tttgttcgttcggctcgcgttaggcagg 68
>34651_fru-mir-375:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttacgcagg 86
|||||||||||||||||||||| |||||
Sbjct: 49 tttgttcgttcggctcgcgttatgcagg 76
>34799_tni-mir-375:mirbase
Length = 77
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttacgcagg 86
|||||||||||||||||||||| |||||
Sbjct: 49 tttgttcgttcggctcgcgttatgcagg 76
>38887_lgi-mir-375:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgttac 81
|||||||||||||||||||||||
Sbjct: 61 tttgttcgttcggctcgcgttac 83
>24704_bfl-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgtta 80
||||||||||||||||||||||
Sbjct: 61 tttgttcgttcggctcgcgtta 82
>26024_gga-mir-375:mirbase
Length = 65
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgtta 80
||||||||||||||||||||||
Sbjct: 41 tttgttcgttcggctcgcgtta 62
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgtta 80
||||||||||||||||||||||
Sbjct: 49 tttgttcgttcggctcgcgtta 70
>34898_sko-mir-375:mirbase
Length = 89
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 56 cgctttgttcgttcggctcgcg 77
||||||||||||||||||||||
Sbjct: 51 cgctttgttcgttcggctcgcg 72
>26822_cfa-mir-375:mirbase
Length = 70
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 41 tttgttcgttcggctcgcgt 60
>27447_mdo-mir-375:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 39 tttgttcgttcggctcgcgt 58
>27878_mml-mir-375:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>28616_hsa-mir-375:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>30352_ptr-mir-375:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>30979_ppy-mir-375:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>32044_mmu-mir-375:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>32888_rno-mir-375:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 45 tttgttcgttcggctcgcgt 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 40 tttgttcgttcggctcgcgt 59
>34837_spu-mir-375:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 59 tttgttcgttcggctcgcgt 78
||||||||||||||||||||
Sbjct: 61 tttgttcgttcggctcgcgt 80
