miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25543_pma-mir-375a:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 53 gcgcgttttgttcgttcggctcgcgttgcgcaggc 87
||||| ||||||||||||||||||||| |||||||
Sbjct: 53 gcgcgctttgttcgttcggctcgcgttacgcaggc 87
Score = 42.1 bits (21), Expect = 7e-05
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 7 cgtctgcgcaacgccgagcccgacgcacaatgc 39
|||||||| |||||||||||||||| ||||||
Sbjct: 7 cgtctgcgtcacgccgagcccgacgcgcaatgc 39
>34399_dre-mir-375-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgttgcgcag 85
||||||||||||||||||||||| |||||
Sbjct: 50 gttttgttcgttcggctcgcgttacgcag 78
>24704_bfl-mir-375:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 58 cgttttgttcgttcggctcgcgtt 81
>25853_xtr-mir-375:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 38 cgttttgttcgttcggctcgcgtt 61
>26024_gga-mir-375:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 38 cgttttgttcgttcggctcgcgtt 61
>26528_tgu-mir-375:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 cgttttgttcgttcggctcgcgtt 79
||||||||||||||||||||||||
Sbjct: 38 cgttttgttcgttcggctcgcgtt 61
>26822_cfa-mir-375:mirbase
Length = 70
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 37 gcgttttgttcgttcggctcgcgt 60
>27447_mdo-mir-375:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 35 gcgttttgttcgttcggctcgcgt 58
>27878_mml-mir-375:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>28616_hsa-mir-375:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>30352_ptr-mir-375:mirbase
Length = 63
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>30979_ppy-mir-375:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>32044_mmu-mir-375:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>32888_rno-mir-375:mirbase
Length = 75
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 41 gcgttttgttcgttcggctcgcgt 64
>33347_bta-mir-375:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 gcgttttgttcgttcggctcgcgt 78
||||||||||||||||||||||||
Sbjct: 36 gcgttttgttcgttcggctcgcgt 59
>38887_lgi-mir-375:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgtt 81
>34398_dre-mir-375-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgtt 69
>34651_fru-mir-375:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgtt 69
>34799_tni-mir-375:mirbase
Length = 77
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgtt 79
|||||||||||||||||||||||
Sbjct: 47 gttttgttcgttcggctcgcgtt 69
>34837_spu-mir-375:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 gttttgttcgttcggctcgcgt 78
||||||||||||||||||||||
Sbjct: 59 gttttgttcgttcggctcgcgt 80
