• Home
• Browse miRNAs
• Deep-seq predictions
• Mirtrons
• miRNA genes
• Degradomes
• Download
• Upload
• Contact

BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>25547_pma-mir-430b:mirbase
          Length = 88

 Score = 48.1 bits (24), Expect = 1e-06
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 64 tgttgttgtgaatgtgagtcagac 87
          ||||||||||||||||||||||||
Sbjct: 65 tgttgttgtgaatgtgagtcagac 88

>25542_pma-mir-373:mirbase
          Length = 90

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 34/38 (89%)
 Strand = Plus / Plus

                                                
Query: 3  ttctggtcacgttgacagcaactccgagcactctgctt 40
          ||||| ||||||| ||||||| | ||||||||||||||
Sbjct: 3  ttctgttcacgtttacagcaatttcgagcactctgctt 40

>25548_pma-mir-430c:mirbase
          Length = 80

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 32/36 (88%)
 Strand = Plus / Plus

                                              
Query: 4  tctggtcacgttgacagcaactccgagcactctgct 39
          |||| ||||||| ||||||| | |||||||||||||
Sbjct: 1  tctgttcacgtttacagcaatttcgagcactctgct 36