miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25549_pma-mir-430d:mirbase
Length = 87
Score = 101 bits (51), Expect = 7e-23
Identities = 72/75 (96%), Gaps = 3/75 (4%)
Strand = Plus / Plus
Query: 1 tctgttcacgtttacagcaatttcgagcactctgct-aatttataatagcaagtgcttga 59
||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct: 4 tctgttcacgtttacagca-tttcgagcactctgcttaatttataatagcaagtgcttga 62
Query: 60 -tttgttgtgaacga 73
||||||||||||||
Sbjct: 63 ttttgttgtgaacga 77
>25542_pma-mir-373:mirbase
Length = 90
Score = 93.7 bits (47), Expect = 2e-20
Identities = 74/79 (93%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 1 tctgttcacgtttacagcaatttcgagcactctgc-taatttataatagcaagtgc-ttg 58
||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |||
Sbjct: 4 tctgttcacgtttacagcaatttcgagcactctgcttcatttataatagcaagtgctttg 63
Query: 59 a-tttgttgtgaacgagaa 76
| ||||||||| |||||||
Sbjct: 64 attttgttgtgtacgagaa 82
>25546_pma-mir-430a:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 tctgttcacgtttacagcaatttcgagcactctgct 36
|||| ||||||| ||||||| | |||||||||||||
Sbjct: 4 tctggtcacgttgacagcaactccgagcactctgct 39
>25547_pma-mir-430b:mirbase
Length = 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 32/36 (88%)
Strand = Plus / Plus
Query: 1 tctgttcacgtttacagcaatttcgagcactctgct 36
|||||||||||| ||| ||| ||||||| |||||||
Sbjct: 2 tctgttcacgttcacaacaacttcgagcgctctgct 37
