miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25706_xtr-mir-18b:mirbase
Length = 78
Score = 147 bits (74), Expect = 1e-36
Identities = 77/78 (98%)
Strand = Plus / Plus
Query: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaa 60
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagtgtagcatctactgccctaaa 60
Query: 61 tgctccttttggcacagg 78
||||||||||||||||||
Sbjct: 61 tgctccttttggcacagg 78
>25900_gga-mir-18b:mirbase
Length = 84
Score = 127 bits (64), Expect = 1e-30
Identities = 73/76 (96%)
Strand = Plus / Plus
Query: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaa 60
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct: 7 ccttgtgttaaggtgcatctagtgcagttagtgacgtagcgtagaatctactgccctaaa 66
Query: 61 tgctccttttggcaca 76
|||||||| |||||||
Sbjct: 67 tgctccttctggcaca 82
>31432_oan-mir-18:mirbase
Length = 130
Score = 111 bits (56), Expect = 7e-26
Identities = 71/76 (93%)
Strand = Plus / Plus
Query: 1 ccttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaa 60
|||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||
Sbjct: 21 ccttgtgttaaggtgcatctagtgcagttagtgaagtagcttagaatctactgccctaaa 80
Query: 61 tgctccttttggcaca 76
|||||||| |||||||
Sbjct: 81 tgctccttctggcaca 96
>33918_ssc-mir-18b:mirbase
Length = 83
Score = 97.6 bits (49), Expect = 1e-21
Identities = 70/77 (90%)
Strand = Plus / Plus
Query: 2 cttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaat 61
||||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaat 63
Query: 62 gctccttttggcacagg 78
|| |||| |||||||||
Sbjct: 64 gccccttctggcacagg 80
>33135_bta-mir-18b:mirbase
Length = 75
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 2 cttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaat 61
||||||||||||||||||||||||||||||||| ||| || ||||||||||||||||
Sbjct: 1 cttgtgttaaggtgcatctagtgcagttagtgaagcagctcagaatctactgccctaaat 60
Query: 62 gctccttttggcaca 76
||||||| |||||||
Sbjct: 61 gctccttctggcaca 75
>27657_mml-mir-18b:mirbase
Length = 71
Score = 85.7 bits (43), Expect = 4e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 64 tccttttggca 74
|||| |||||
Sbjct: 61 cccttctggca 71
>28366_hsa-mir-18b:mirbase
Length = 71
Score = 85.7 bits (43), Expect = 4e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 64 tccttttggca 74
|||| |||||
Sbjct: 61 cccttctggca 71
>30758_ppy-mir-18b:mirbase
Length = 71
Score = 85.7 bits (43), Expect = 4e-18
Identities = 64/71 (90%)
Strand = Plus / Plus
Query: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
Query: 64 tccttttggca 74
|||| |||||
Sbjct: 61 cccttctggca 71
>30153_ptr-mir-18b:mirbase
Length = 70
Score = 79.8 bits (40), Expect = 3e-16
Identities = 55/60 (91%)
Strand = Plus / Plus
Query: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
||||||||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 1 tgtgttaaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 60
>34550_fru-mir-18:mirbase
Length = 76
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatg 62
||||| ||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 63 ctccttttggca 74
|||||| |||||
Sbjct: 61 ctccttctggca 72
>34698_tni-mir-18:mirbase
Length = 76
Score = 79.8 bits (40), Expect = 3e-16
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatg 62
||||| ||||||||||||||||||| |||||| |||| ||||| |||||||||||| ||
Sbjct: 1 ttgtgctaaggtgcatctagtgcagatagtgaaatagactagcacctactgccctaagtg 60
Query: 63 ctccttttggca 74
|||||| |||||
Sbjct: 61 ctccttctggca 72
>25705_xtr-mir-18a:mirbase
Length = 87
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 69 ttggca 74
|||||
Sbjct: 74 ctggca 79
>25899_gga-mir-18a:mirbase
Length = 93
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 69 ttggca 74
|||||
Sbjct: 74 ctggca 79
>26628_cfa-mir-18a:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 69 ttggca 74
|||||
Sbjct: 74 ctggca 79
>27337_mdo-mir-18:mirbase
Length = 72
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 7 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 66
Query: 69 ttggca 74
|||||
Sbjct: 67 ctggca 72
>27483_age-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>27544_lla-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>27592_sla-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>27656_mml-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>28175_mne-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>28263_ggo-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>28365_hsa-mir-18a:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>30047_ppa-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>30152_ptr-mir-18a:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>30757_ppy-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>31397_lca-mir-18:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>31780_mmu-mir-18a:mirbase
Length = 96
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 69 ttggca 74
|||||
Sbjct: 77 ctggca 82
>32664_rno-mir-18a:mirbase
Length = 96
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 17 taaggtgcatctagtgcagatagtgaagtagactagcatctactgccctaagtgctcctt 76
Query: 69 ttggca 74
|||||
Sbjct: 77 ctggca 82
>33134_bta-mir-18a:mirbase
Length = 71
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 65
Query: 69 ttggca 74
|||||
Sbjct: 66 ctggca 71
>33917_ssc-mir-18a:mirbase
Length = 92
Score = 75.8 bits (38), Expect = 4e-15
Identities = 59/66 (89%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 14 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 73
Query: 69 ttggca 74
|||||
Sbjct: 74 ctggca 79
>31781_mmu-mir-18b:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 67/77 (87%)
Strand = Plus / Plus
Query: 2 cttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaat 61
|||||||||||||||||||||||| |||||||| ||| || ||||||||||||||||
Sbjct: 4 cttgtgttaaggtgcatctagtgctgttagtgaagcagcttacaatctactgccctaaat 63
Query: 62 gctccttttggcacagg 78
|| |||| | |||||||
Sbjct: 64 gccccttctcgcacagg 80
>34211_dre-mir-18a:mirbase
Length = 83
Score = 73.8 bits (37), Expect = 2e-14
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 3 ttgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatg 62
||||| ||||||||||||||||||| |||||| ||| ||||| |||||||||||| ||
Sbjct: 5 ttgtgctaaggtgcatctagtgcagatagtgaagtagactagcacctactgccctaagtg 64
Query: 63 ctccttttggcac 75
|||||| ||||||
Sbjct: 65 ctccttctggcac 77
>26404_tgu-mir-18a:mirbase
Length = 72
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 11 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 70
>26950_eca-mir-18a:mirbase
Length = 61
Score = 71.9 bits (36), Expect = 6e-14
Identities = 54/60 (90%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
||||||||||||||||||| |||||| ||| |||||||||||||||||| ||||||||
Sbjct: 1 taaggtgcatctagtgcagatagtgaagtagattagcatctactgccctaagtgctcctt 60
>26629_cfa-mir-18b:mirbase
Length = 77
Score = 69.9 bits (35), Expect = 2e-13
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 4 tgtgttaaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
||||||||||||||||||||||||||||||| || ||| | ||||||||||||||||
Sbjct: 3 tgtgttaaggtgcatctagtgcagttagtgaagccgcttagaacctactgccctaaatgc 62
Query: 64 tccttttggcacagg 78
|||| ||||||||
Sbjct: 63 cccttccggcacagg 77
>26951_eca-mir-18b:mirbase
Length = 59
Score = 69.9 bits (35), Expect = 2e-13
Identities = 50/55 (90%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgc 63
|||||||||||||||||||||||||| ||| ||| ||||||||||||||||||
Sbjct: 1 taaggtgcatctagtgcagttagtgaagcagcttagaatctactgccctaaatgc 55
>26405_tgu-mir-18b:mirbase
Length = 132
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 1 ccttgtgttaaggtgcatctagtgcagttagtga 34
||||||||||||||||||||||||||||||||||
Sbjct: 93 ccttgtgttaaggtgcatctagtgcagttagtga 126
>34212_dre-mir-18b:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 57/66 (86%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
|||||||||| |||||||| |||||| |||| ||||| |||||||||||| ||| ||||
Sbjct: 13 taaggtgcatttagtgcagatagtgaaatagactagcacctactgccctaagtgcccctt 72
Query: 69 ttggca 74
|||||
Sbjct: 73 ctggca 78
>34213_dre-mir-18c:mirbase
Length = 85
Score = 52.0 bits (26), Expect = 6e-08
Identities = 56/66 (84%)
Strand = Plus / Plus
Query: 9 taaggtgcatctagtgcagttagtgacatagcgtagcatctactgccctaaatgctcctt 68
|||||||||||| ||| ||||||||| ||| ||| ||||||||| ||| ||| |||||
Sbjct: 11 taaggtgcatcttgtgtagttagtgaagtagtctagtatctactgcgctagatgttcctt 70
Query: 69 ttggca 74
||||||
Sbjct: 71 ttggca 76
>25433_pma-mir-18a:mirbase
Length = 97
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 2 cttgtgttaaggtgcatctagtgcagttagt 32
|||||| ||||||||||||||||||| ||||
Sbjct: 11 cttgtgctaaggtgcatctagtgcagatagt 41
