miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25711_xtr-mir-20b:mirbase
Length = 74
Score = 139 bits (70), Expect = 3e-34
Identities = 73/74 (98%)
Strand = Plus / Plus
Query: 1 gcagttccaaagtgctcatagtgcaggtagttgtattcatgttctactgtaatatgggca 60
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1 gcagttccaaagtgctcatagtgcaggtagttgtattgatgttctactgtaatatgggca 60
Query: 61 cttacagtactgct 74
||||||||||||||
Sbjct: 61 cttacagtactgct 74
>31437_oan-mir-20b:mirbase
Length = 106
Score = 75.8 bits (38), Expect = 4e-15
Identities = 66/73 (90%), Gaps = 3/73 (4%)
Strand = Plus / Plus
Query: 2 cagttccaaagtgctcatagtgcaggtagttgtattca--tg-ttctactgtaatatggg 58
|||| |||||||||||||||||||||||||| | |||| || |||||||||||| ||||
Sbjct: 18 cagtaccaaagtgctcatagtgcaggtagtttttttcaattgattctactgtaatgtggg 77
Query: 59 cacttacagtact 71
|||||||||||||
Sbjct: 78 cacttacagtact 90
>34219_dre-mir-20b:mirbase
Length = 94
Score = 54.0 bits (27), Expect = 1e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 gcagttccaaagtgctcatagtgcaggtagt 31
|||||||||||||||||| ||||||||||||
Sbjct: 13 gcagttccaaagtgctcacagtgcaggtagt 43
>26956_eca-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagtt 30
>27662_mml-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagtt 30
>28371_hsa-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagtt 30
>30158_ptr-mir-20b:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagtt 30
>30763_ppy-mir-20b:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 5 ccaaagtgctcatagtgcaggtagtt 30
>31786_mmu-mir-20b:mirbase
Length = 80
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
||||||||||||||||||||||||||
Sbjct: 11 ccaaagtgctcatagtgcaggtagtt 36
>25904_gga-mir-20b:mirbase
Length = 85
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 44 ctactgtaatatgggcacttacagtactg 72
|||||||||| ||||||||||||||||||
Sbjct: 47 ctactgtaatgtgggcacttacagtactg 75
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 11 caaagtgctcatagtgcaggtag 33
>32669_rno-mir-20b:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
||||||||||||||||||||||||
Sbjct: 7 ccaaagtgctcatagtgcaggtag 30
>32670_rno-mir-20b:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
||||||||||||||||||||||||
Sbjct: 7 ccaaagtgctcatagtgcaggtag 30
>25438_pma-mir-20a:mirbase
Length = 91
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagttg 33
|||||||||| ||||||||||||||||
Sbjct: 15 ccaaagtgcttatagtgcaggtagttg 41
>26410_tgu-mir-20b:mirbase
Length = 73
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 8 caaagtgctcatagtgcaggtag 30
|||||||||||||||||||||||
Sbjct: 11 caaagtgctcatagtgcaggtag 33
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 44 ctactgtaatatgggcacttacagtac 70
|||||||||| ||||||||||||||||
Sbjct: 47 ctactgtaatgtgggcacttacagtac 73
>33140_bta-mir-20b:mirbase
Length = 69
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagtt 32
|||||||||||| |||||||||||||
Sbjct: 5 ccaaagtgctcacagtgcaggtagtt 30
>26634_cfa-mir-20b:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtagt 31
|||||||||||| ||||||||||||
Sbjct: 4 ccaaagtgctcacagtgcaggtagt 28
>25439_pma-mir-20b:mirbase
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 7 ccaaagtgctcatagtgcaggtag 30
|||||||||| |||||||||||||
Sbjct: 17 ccaaagtgctgatagtgcaggtag 40
>25710_xtr-mir-20a:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagtt 32
|||||||| |||||||||||||||
Sbjct: 15 aaagtgcttatagtgcaggtagtt 38
>34553_fru-mir-20:mirbase
Length = 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagtt 32
|||||||| |||||||||||||||
Sbjct: 10 aaagtgcttatagtgcaggtagtt 33
>34701_tni-mir-20:mirbase
Length = 73
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagtt 32
|||||||| |||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagtt 32
>25903_gga-mir-20a:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 20 aaagtgcttatagtgcaggtagt 42
>26409_tgu-mir-20a:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 12 aaagtgcttatagtgcaggtagt 34
>26633_cfa-mir-20a:mirbase
Length = 59
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 2 aaagtgcttatagtgcaggtagt 24
>26955_eca-mir-20a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>27340_mdo-mir-20:mirbase
Length = 102
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 25 aaagtgcttatagtgcaggtagt 47
>27487_age-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>27548_lla-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>27596_sla-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>27661_mml-mir-20a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>28179_mne-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>28267_ggo-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>28370_hsa-mir-20a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>30051_ppa-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>30157_ptr-mir-20a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>30762_ppy-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>31401_lca-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>31436_oan-mir-20a-2:mirbase
Length = 109
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 24 aaagtgcttatagtgcaggtagt 46
>31785_mmu-mir-20a:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 28 aaagtgcttatagtgcaggtagt 50
>32668_rno-mir-20a:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 17 aaagtgcttatagtgcaggtagt 39
>33139_bta-mir-20a:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>33922_ssc-mir-20:mirbase
Length = 71
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 9 aaagtgcttatagtgcaggtagt 31
>34218_dre-mir-20a:mirbase
Length = 153
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 9 aaagtgctcatagtgcaggtagt 31
|||||||| ||||||||||||||
Sbjct: 52 aaagtgcttatagtgcaggtagt 74
