miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25718_xtr-mir-24b:mirbase
Length = 68
Score = 119 bits (60), Expect = 2e-28
Identities = 66/68 (97%)
Strand = Plus / Plus
Query: 1 ctcccgtatctactgggctgataatcagtggttataacttcccctggctcagttcagcag 60
|||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 1 ctcccgtacctactgggctgataatcagtggttatatcttcccctggctcagttcagcag 60
Query: 61 gacaggag 68
||||||||
Sbjct: 61 gacaggag 68
>25444_pma-mir-24:mirbase
Length = 94
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 57 ctggctcagttcagcagga 75
>25716_xtr-mir-24a:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 42 ctggctcagttcagcagga 60
>25717_xtr-mir-24a:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 42 ctggctcagttcagcagga 60
>25908_gga-mir-24:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>26413_tgu-mir-24:mirbase
Length = 132
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 100 ctggctcagttcagcagga 118
>26639_cfa-mir-24-1:mirbase
Length = 62
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 39 ctggctcagttcagcagga 57
>26640_cfa-mir-24-2:mirbase
Length = 62
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 39 ctggctcagttcagcagga 57
>26961_eca-mir-24:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>26962_eca-mir-24-2:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>27345_mdo-mir-24-1:mirbase
Length = 57
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 39 ctggctcagttcagcagga 57
>27346_mdo-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 45 ctggctcagttcagcagga 63
>27667_mml-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>27668_mml-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>28183_mne-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>28184_mne-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>28270_ggo-mir-24:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>28377_hsa-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>28378_hsa-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>29230_hsa-mir-3074:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 32 ctggctcagttcagcagga 14
>29231_hsa-mir-3074:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 32 ctggctcagttcagcagga 14
>30057_ppa-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>30056_ppa-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>30163_ptr-mir-24-1:mirbase
Length = 67
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 42 ctggctcagttcagcagga 60
>30164_ptr-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>30768_ppy-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>30769_ppy-mir-24-2:mirbase
Length = 73
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>31442_oan-mir-24:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 51 ctggctcagttcagcagga 69
>31791_mmu-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>31792_mmu-mir-24-2:mirbase
Length = 107
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 60 ctggctcagttcagcagga 78
>32511_mmu-mir-3074-1:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 34 ctggctcagttcagcagga 16
>32512_mmu-mir-3074-1:mirbase
Length = 85
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 34 ctggctcagttcagcagga 16
>32513_mmu-mir-3074-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 34 ctggctcagttcagcagga 16
>32514_mmu-mir-3074-2:mirbase
Length = 83
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 34 ctggctcagttcagcagga 16
>32675_rno-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>32676_rno-mir-24-2:mirbase
Length = 108
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 60 ctggctcagttcagcagga 78
>33024_rno-mir-3074:mirbase
Length = 117
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 47 ctggctcagttcagcagga 29
>33147_bta-mir-24-1:mirbase
Length = 68
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>33148_bta-mir-24-2:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>33928_ssc-mir-24-1:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 49 ctggctcagttcagcagga 67
>33929_ssc-mir-24-2:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 51 ctggctcagttcagcagga 69
>34228_dre-mir-24-1:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 48 ctggctcagttcagcagga 66
>34229_dre-mir-24-2:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 50 ctggctcagttcagcagga 68
>34230_dre-mir-24-3:mirbase
Length = 142
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 79 ctggctcagttcagcagga 97
>34231_dre-mir-24-4:mirbase
Length = 90
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 55 ctggctcagttcagcagga 73
>34561_fru-mir-24-1:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 53 ctggctcagttcagcagga 71
>34562_fru-mir-24-1:mirbase
Length = 79
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 53 ctggctcagttcagcagga 71
>34563_fru-mir-24-2:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 50 ctggctcagttcagcagga 68
>34709_tni-mir-24-1:mirbase
Length = 70
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 43 ctggctcagttcagcagga 61
>34710_tni-mir-24-2:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 44 ctggctcagttcagcagga 62
|||||||||||||||||||
Sbjct: 50 ctggctcagttcagcagga 68
