miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 61 cctactttatggatgagtgtactggg 86
||||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactggg 86
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 61 cctactttatggatgagtgtactggg 86
||||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactggg 86
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 61 cctactttatggatgagtgtactggg 86
||||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactggg 86
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 61 cctactttatggatgagtgtactggg 86
||||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactggg 86
>25962_gga-mir-142:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 63 cctactttatggatgagtgtactg 86
>25963_gga-mir-142:mirbase
Length = 88
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 63 cctactttatggatgagtgtactg 86
>27746_mml-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>27747_mml-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>28461_hsa-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>28462_hsa-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>30234_ptr-mir-142:mirbase
Length = 86
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>30845_ppy-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>30846_ppy-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>32747_rno-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>32748_rno-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>33228_bta-mir-142:mirbase
Length = 87
Score = 111 bits (56), Expect = 8e-26
Identities = 78/84 (92%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 3 cagtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>33991_ssc-mir-142:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
Query: 63 tactttatggatgagtgtact 83
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 105 bits (53), Expect = 5e-24
Identities = 75/81 (92%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 3 gtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcc 62
|||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcc 59
Query: 63 tactttatggatgagtgtact 83
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>31499_oan-mir-142:mirbase
Length = 110
Score = 95.6 bits (48), Expect = 5e-21
Identities = 76/84 (90%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| || ||||||||||||||||||||||| |||| ||| | | ||||||||||
Sbjct: 16 cagtgcagtcatccataaagtagaaagcactacta-acagcgctgtagggtgtagtgttt 74
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 75 cctactttatggatgagtgtactg 98
>26473_tgu-mir-142:mirbase
Length = 71
Score = 93.7 bits (47), Expect = 2e-20
Identities = 65/71 (91%)
Strand = Plus / Plus
Query: 4 tgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcct 63
||||| |||||||||||||||||||||||||| |||| |||| | | |||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 64 actttatggat 74
|||||||||||
Sbjct: 61 actttatggat 71
>27390_mdo-mir-142:mirbase
Length = 74
Score = 85.7 bits (43), Expect = 5e-18
Identities = 68/75 (90%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 5 gcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgtttccta 64
|||| |||||||||||||||||||||||||| |||| | || | | ||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactacta-acagcaatgtagggtgtagtgtttccta 59
Query: 65 ctttatggatgagtg 79
|||||||||||||||
Sbjct: 60 ctttatggatgagtg 74
>27041_eca-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 70
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 71 ggatg 75
|||||
Sbjct: 60 ggatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 70
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 71 ggatg 75
|||||
Sbjct: 60 ggatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 70
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 71 ggatg 75
|||||
Sbjct: 60 ggatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 81.8 bits (41), Expect = 7e-17
Identities = 60/65 (92%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 11 acccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttat 70
||||||||||||||||||||||||| |||| |||| | | ||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttat 59
Query: 71 ggatg 75
|||||
Sbjct: 60 ggatg 64
>26716_cfa-mir-142:mirbase
Length = 63
Score = 79.8 bits (40), Expect = 3e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 12 cccataaagtagaaagcactactagacaggactgaacgctgtagtgtttcctactttatg 71
|||||||||||||||||||||||| |||| |||| | | |||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactacta-acagcactggagggtgtagtgtttcctactttatg 59
Query: 72 gatg 75
||||
Sbjct: 60 gatg 63
>34311_dre-mir-142a:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 65 cctactttatggatgagtgtactg 88
>34312_dre-mir-142a:mirbase
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 5 cagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgttt 64
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 65 cctactttatggatgagtgtactg 88
>34313_dre-mir-142b:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| ||| ||||||||||| |||||||||| || || || ||||||||||
Sbjct: 2 cagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 62 cctactttatggatgagtgtactg 85
>34604_fru-mir-142b:mirbase
Length = 86
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||| | |||||||||||||||||||||||||| || || || ||||||||||
Sbjct: 2 cagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||| ||||
Sbjct: 62 cctactttatggatgagtgcactg 85
>34750_tni-mir-142a:mirbase
Length = 90
Score = 71.9 bits (36), Expect = 7e-14
Identities = 72/84 (85%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||||| || ||||||||||||||||||||||| || | || ||||||||||
Sbjct: 4 cagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgttt 63
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||||||||
Sbjct: 64 cctactttatggatgagtgtactg 87
>34603_fru-mir-142a:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 1e-12
Identities = 34/34 (100%)
Strand = Plus / Plus
Query: 51 tgtagtgtttcctactttatggatgagtgtactg 84
||||||||||||||||||||||||||||||||||
Sbjct: 52 tgtagtgtttcctactttatggatgagtgtactg 85
>34751_tni-mir-142b:mirbase
Length = 86
Score = 63.9 bits (32), Expect = 2e-11
Identities = 71/84 (84%)
Strand = Plus / Plus
Query: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
|||||| | |||||||||||||||||||||||||| || | || ||||||||||
Sbjct: 2 cagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgttt 61
Query: 61 cctactttatggatgagtgtactg 84
||||||||||||||||||| ||||
Sbjct: 62 cctactttatggatgagtgcactg 85
