miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25814_xtr-mir-194-1:mirbase
Length = 80
Score = 119 bits (60), Expect = 3e-28
Identities = 73/76 (96%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 tagtgtgtatcgggtgtaacagcaactccatgtggacttgtcc-ttttccagtggagatg 59
||||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||
Sbjct: 1 tagtgtgtatcaggtgtaacagcaactccatgtggacttgtccgtattccagtggagatg 60
Query: 60 ctgttacttttgatgg 75
||||||||||||||||
Sbjct: 61 ctgttacttttgatgg 76
>27514_age-mir-194:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>27787_mml-mir-194-1:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>28228_mne-mir-194:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>28321_ggo-mir-194:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>28504_hsa-mir-194-1:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>30269_ptr-mir-194:mirbase
Length = 85
Score = 75.8 bits (38), Expect = 4e-15
Identities = 60/65 (92%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>33265_bta-mir-194-1:mirbase
Length = 97
Score = 75.8 bits (38), Expect = 4e-15
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggactt---gtccttttccagtggagatgctgttacttttg 71
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 21 tgtaacagcaactccatgtggactgtgcgtcaatttccagtggagatgctgttacttttg 80
Query: 72 atgg 75
||||
Sbjct: 81 atgg 84
>27078_eca-mir-194-2:mirbase
Length = 85
Score = 69.9 bits (35), Expect = 2e-13
Identities = 58/65 (89%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggacttgt---ccttttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgggtaccaatttccagtggagatgctgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>30885_ppy-mir-194:mirbase
Length = 85
Score = 67.9 bits (34), Expect = 1e-12
Identities = 59/65 (90%), Gaps = 3/65 (4%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttactttt 70
||||||||||||||||||||||||| ||| | ||||||||||||||| ||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggactgtgtaccaatttccagtggagatgttgttactttt 73
Query: 71 gatgg 75
|||||
Sbjct: 74 gatgg 78
>31523_oan-mir-194-1:mirbase
Length = 98
Score = 65.9 bits (33), Expect = 4e-12
Identities = 58/64 (90%), Gaps = 3/64 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggacttgtcct--tttccagtggagatgctgttacttttga 72
|||||||||||||||||||||| || | || ||||||||||||| ||||||||||||||
Sbjct: 22 tgtaacagcaactccatgtgga-ttatgctgatttccagtggagaggctgttacttttga 80
Query: 73 tgga 76
||||
Sbjct: 81 tgga 84
>31912_mmu-mir-194-1:mirbase
Length = 67
Score = 61.9 bits (31), Expect = 6e-11
Identities = 60/67 (89%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 9 atcgggtgtaacagcaactccatgtggact-tg-tccttttccagtggagatgctgttac 66
|||||||||||||||||||||||||||||| || || ||||||||||| |||||||||
Sbjct: 1 atcgggtgtaacagcaactccatgtggactgtgctcggattccagtggagctgctgttac 60
Query: 67 ttttgat 73
|| ||||
Sbjct: 61 ttctgat 67
>26492_tgu-mir-194-1:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgatgg 75
||||||||||||||||||||||||||||||
Sbjct: 43 ttccagtggagatgctgttacttttgatgg 72
>26493_tgu-mir-194-2:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgatgg 75
||||||||||||||||||||||||||||||
Sbjct: 43 ttccagtggagatgctgttacttttgatgg 72
>25984_gga-mir-194:mirbase
Length = 75
Score = 56.0 bits (28), Expect = 4e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 46 ttccagtggagatgctgttacttttgat 73
||||||||||||||||||||||||||||
Sbjct: 46 ttccagtggagatgctgttacttttgat 73
>26750_cfa-mir-194:mirbase
Length = 58
Score = 56.0 bits (28), Expect = 4e-09
Identities = 51/58 (87%), Gaps = 3/58 (5%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggact---tgtccttttccagtggagatgctgttacttt 69
|||||||||||||||||||||| | || | |||||||||||||||||||||||||
Sbjct: 1 tgtaacagcaactccatgtggattgtgtgccaatttccagtggagatgctgttacttt 58
>25514_pma-mir-194:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 1e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 2 agtgtgtatcgggtgtaacagcaactccatgtgga 36
|||||| ||| ||||||||||||||||||||||||
Sbjct: 4 agtgtgcatcaggtgtaacagcaactccatgtgga 38
>34023_ssc-mir-194:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttacttttg 71
||||||||| |||||||||||||| || || |||||||||||||||||||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 72 a 72
|
Sbjct: 71 a 71
>34024_ssc-mir-194:mirbase
Length = 78
Score = 52.0 bits (26), Expect = 6e-08
Identities = 54/61 (88%), Gaps = 3/61 (4%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtggact-tgtcct--tttccagtggagatgctgttacttttg 71
||||||||| |||||||||||||| || || |||||||||||||||||||||| ||||
Sbjct: 11 tgtaacagcgactccatgtggactgtgccccaatttccagtggagatgctgttacctttg 70
Query: 72 a 72
|
Sbjct: 71 a 71
>32780_rno-mir-194-1:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 14 gtgtaacagcaactccatgtggact 38
|||||||||||||||||||||||||
Sbjct: 14 gtgtaacagcaactccatgtggact 38
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 48 ccagtggagatgctgttacttttgatgg 75
||||||||| ||||||||||||||||||
Sbjct: 50 ccagtggagctgctgttacttttgatgg 77
>25815_xtr-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27077_eca-mir-194:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>27788_mml-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>28505_hsa-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>31524_oan-mir-194-2:mirbase
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 18 tgtaacagcaactccatgtgga 39
>31913_mmu-mir-194-2:mirbase
Length = 86
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 16 tgtaacagcaactccatgtgga 37
>32781_rno-mir-194-2:mirbase
Length = 85
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>33266_bta-mir-194-2:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34345_dre-mir-194a:mirbase
Length = 84
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 15 tgtaacagcaactccatgtgga 36
>34621_fru-mir-194:mirbase
Length = 72
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 8 tgtaacagcaactccatgtgga 29
>34768_tni-mir-194:mirbase
Length = 81
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 tgtaacagcaactccatgtgga 36
||||||||||||||||||||||
Sbjct: 11 tgtaacagcaactccatgtgga 32
