miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25842_xtr-mir-223:mirbase
Length = 86
Score = 161 bits (81), Expect = 1e-40
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 2 gtgtggcactgagtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagt 61
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 2 gtgtggcactgagtgtatttgacaagctgagtccgacactcaatgagacagagtgtcagt 61
Query: 62 ttgtcaaataccccaagtgaggcac 86
|||||||||||||||||||||||||
Sbjct: 62 ttgtcaaataccccaagtgaggcac 86
>26520_tgu-mir-223:mirbase
Length = 71
Score = 119 bits (60), Expect = 3e-28
Identities = 70/72 (97%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 1 gtgtatttgacaagctgagtccgacactcagtgtg-cagagtgtcagtttgtcaaatacc 59
Query: 74 ccaagtgaggca 85
||||||||||||
Sbjct: 60 ccaagtgaggca 71
>26013_gga-mir-223:mirbase
Length = 100
Score = 111 bits (56), Expect = 8e-26
Identities = 74/80 (92%)
Strand = Plus / Plus
Query: 7 gcactgagtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtc 66
|||||| |||||||||||||||||||| |||||||||| | |||||||||||||||||
Sbjct: 11 gcactgcgtgtatttgacaagctgagtttgacactcagtctggcagagtgtcagtttgtc 70
Query: 67 aaataccccaagtgaggcac 86
||||||||||||||||||||
Sbjct: 71 aaataccccaagtgaggcac 90
>30918_ppy-mir-223:mirbase
Length = 110
Score = 89.7 bits (45), Expect = 3e-19
Identities = 66/73 (90%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>27436_mdo-mir-223:mirbase
Length = 111
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 31 gtgtatttgacaagctgagttggacactccgtgtcgtagagtgtcagtttgtcaaatacc 90
Query: 74 ccaagtgaggca 85
||||||||||||
Sbjct: 91 ccaagtgaggca 102
>27821_mml-mir-223:mirbase
Length = 110
Score = 87.7 bits (44), Expect = 1e-18
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggca 85
||||||| ||||
Sbjct: 87 ccaagtgcggca 98
>27628_sla-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 5e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtg 80
|||||||
Sbjct: 87 ccaagtg 93
>31953_mmu-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 5e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtg 80
|||||||
Sbjct: 87 ccaagtg 93
>32819_rno-mir-223:mirbase
Length = 110
Score = 85.7 bits (43), Expect = 5e-18
Identities = 61/67 (91%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactctgtgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtg 80
|||||||
Sbjct: 87 ccaagtg 93
>26784_cfa-mir-223:mirbase
Length = 103
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttagacactccatgtggaagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>27108_eca-mir-223:mirbase
Length = 104
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 28 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 87
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 88 ccaagtgcggcac 100
>28337_ggo-mir-223:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>28544_hsa-mir-223:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>30124_ppa-mir-223:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>30301_ptr-mir-223:mirbase
Length = 110
Score = 81.8 bits (41), Expect = 7e-17
Identities = 65/73 (89%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagacagagtgtcagtttgtcaaatacc 73
|||||||||||||||||||| ||||||| || | |||||||||||||||||||||||
Sbjct: 27 gtgtatttgacaagctgagttggacactccatgtggtagagtgtcagtttgtcaaatacc 86
Query: 74 ccaagtgaggcac 86
||||||| |||||
Sbjct: 87 ccaagtgcggcac 99
>31544_oan-mir-223:mirbase
Length = 124
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 14 gtgtatttgacaagctgagtccgacactcagtgagaca-gagtgtcagtttgtcaaatac 72
|||||||||||||||||||| ||||||| ||| | |||||||||||||||||||||
Sbjct: 35 gtgtatttgacaagctgagttggacactccgtgtggtttgagtgtcagtttgtcaaatac 94
Query: 73 cccaagtgaggca 85
|| ||||||||||
Sbjct: 95 cctaagtgaggca 107
>34647_fru-mir-223:mirbase
Length = 89
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 gagtgtcagtttgtcaaataccccaagtgagg 83
||||||||||||||||||||||||||||||||
Sbjct: 45 gagtgtcagtttgtcaaataccccaagtgagg 76
>34795_tni-mir-223:mirbase
Length = 85
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 52 gagtgtcagtttgtcaaataccccaagtgagg 83
||||||||||||||||||||||||||||||||
Sbjct: 54 gagtgtcagtttgtcaaataccccaagtgagg 85
>33303_bta-mir-223:mirbase
Length = 108
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 53 agtgtcagtttgtcaaataccccaagtgaggca 85
|||||||||||||||||||||||||||| ||||
Sbjct: 64 agtgtcagtttgtcaaataccccaagtgtggca 96
>34384_dre-mir-223:mirbase
Length = 99
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 54 gtgtcagtttgtcaaataccccaagtgagg 83
||||||||||||||||||||||||| ||||
Sbjct: 70 gtgtcagtttgtcaaataccccaagagagg 99
