miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25849_xtr-mir-363:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 87/88 (98%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ttttgttgttcgcgggtggatcacgatgcaattttatttaagtttggtaggagaaaaatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttttgttgttcgcgggtggatcacgatgcaattttattta-gtttggtaggagaaaaatt 59
Query: 61 gcacggtatccatctgtaaaccgcagaa 88
||||||||||||||||||||||||||||
Sbjct: 60 gcacggtatccatctgtaaaccgcagaa 87
>25850_xtr-mir-363:mirbase
Length = 87
Score = 159 bits (80), Expect = 4e-40
Identities = 87/88 (98%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 ttttgttgttcgcgggtggatcacgatgcaattttatttaagtttggtaggagaaaaatt 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 1 ttttgttgttcgcgggtggatcacgatgcaattttattta-gtttggtaggagaaaaatt 59
Query: 61 gcacggtatccatctgtaaaccgcagaa 88
||||||||||||||||||||||||||||
Sbjct: 60 gcacggtatccatctgtaaaccgcagaa 87
>31548_oan-mir-363:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 70/74 (94%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 14 cgggtggatcacgatgcaattttgatta-gtttagtaggagaaaaattgcacggtatcca 72
Query: 73 tctgtaaaccgcag 86
||||||||||||||
Sbjct: 73 tctgtaaaccgcag 86
>26525_tgu-mir-363:mirbase
Length = 89
Score = 105 bits (53), Expect = 5e-24
Identities = 69/73 (94%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||||||
Sbjct: 14 cgggtggatcacgatgcaattttgatta-gtttagtaggagaaaaattgcacggtatcca 72
Query: 73 tctgtaaaccgca 85
|||||||||||||
Sbjct: 73 tctgtaaaccgca 85
>34071_ssc-mir-363:mirbase
Length = 80
Score = 89.7 bits (45), Expect = 3e-19
Identities = 67/73 (91%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 9 cgggtggatcacgatgcaattttgatta-gtatcataggagaaaaattgcacggtatcca 67
Query: 73 tctgtaaaccgca 85
|||||||||||||
Sbjct: 68 tctgtaaaccgca 80
>27145_eca-mir-363:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 7 cgggtggatcacgatgcaattttgatta-gtataataggagaaaaattgcacggtatcca 65
Query: 73 tctgtaaacc 82
||||||||||
Sbjct: 66 tctgtaaacc 75
>27444_mdo-mir-363:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 2e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaa-attgcacggtatcc 71
||||||||||||||||||| ||| ||||||| |||||||||| ||||||||||||||
Sbjct: 12 cgggtggatcacgatgcaaattttgataagtttaataggagaaaaaattgcacggtatcc 71
Query: 72 atctgtaaaccgca 85
||||||||||||||
Sbjct: 72 atctgtaaaccgca 85
>27863_mml-mir-363:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 7 cgggtggatcacgatgcaattttgatta-gtatcataggagaaaaattgcacggtatcca 65
Query: 73 tctgtaaacc 82
||||||||||
Sbjct: 66 tctgtaaacc 75
>30967_ppy-mir-363:mirbase
Length = 75
Score = 83.8 bits (42), Expect = 2e-17
Identities = 64/70 (91%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 7 cgggtggatcacgatgcaattttgatta-gtatcataggagaaaaattgcacggtatcca 65
Query: 73 tctgtaaacc 82
||||||||||
Sbjct: 66 tctgtaaacc 75
>28600_hsa-mir-363:mirbase
Length = 75
Score = 75.8 bits (38), Expect = 5e-15
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| | | || | |||||||||||||||||||||||||
Sbjct: 7 cgggtggatcacgatgcaattttgatga-gtatcataggagaaaaattgcacggtatcca 65
Query: 73 tctgtaaacc 82
||||||||||
Sbjct: 66 tctgtaaacc 75
>33337_bta-mir-363:mirbase
Length = 74
Score = 71.9 bits (36), Expect = 7e-14
Identities = 58/64 (90%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| || | |||||||||||||||||||||||||
Sbjct: 7 cgggtggatcacgatgcaattttgatta-gtataataggagaaaaattgcacggtatcca 65
Query: 73 tctg 76
||||
Sbjct: 66 tctg 69
>26813_cfa-mir-363:mirbase
Length = 67
Score = 69.9 bits (35), Expect = 3e-13
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| | | || | |||||||||||||||||||||||||
Sbjct: 2 cgggtggatcacgatgcaattttgatga-gtataataggagaaaaattgcacggtatcca 60
Query: 73 tctgtaa 79
|||||||
Sbjct: 61 tctgtaa 67
>32882_rno-mir-363:mirbase
Length = 87
Score = 67.9 bits (34), Expect = 1e-12
Identities = 65/74 (87%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 13 cgggtggatcacgatgcaattttatttaagtttggtaggagaaaaattgcacggtatcca 72
||||||||||||||||||||||| ||| | | | ||||| |||||||||||||||||
Sbjct: 13 cgggtggatcacgatgcaattttgatta-gagtaatgggagagaaattgcacggtatcca 71
Query: 73 tctgtaaaccgcag 86
||||||||||||||
Sbjct: 72 tctgtaaaccgcag 85
>32034_mmu-mir-363:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 48 taggagaaaaattgcacggtatccatctgtaaacc 82
|||||| ||||||||||||||||||||||||||||
Sbjct: 41 taggaggaaaattgcacggtatccatctgtaaacc 75
>32035_mmu-mir-363:mirbase
Length = 75
Score = 61.9 bits (31), Expect = 7e-11
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 48 taggagaaaaattgcacggtatccatctgtaaacc 82
|||||| ||||||||||||||||||||||||||||
Sbjct: 41 taggaggaaaattgcacggtatccatctgtaaacc 75
>34393_dre-mir-363:mirbase
Length = 127
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 aaaaattgcacggtatccatctgtaaaccgc 84
|||||||||||||||||||||||||| ||||
Sbjct: 75 aaaaattgcacggtatccatctgtaatccgc 105
