miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>32069_mmu-mir-429:mirbase
Length = 83
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 68
Query: 61 ccgtccat 68
||||||||
Sbjct: 69 ccgtccat 76
>32910_rno-mir-429:mirbase
Length = 85
Score = 127 bits (64), Expect = 1e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 1 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 60
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 11 tggatgtcttaccagacatggttagatctggatgtatctgtctaatactgtctggtaatg 70
Query: 61 ccgtccat 68
||||||||
Sbjct: 71 ccgtccat 78
>27176_eca-mir-429:mirbase
Length = 67
Score = 85.7 bits (43), Expect = 3e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
||||||||||||| ||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 5 gtcttaccagacacggttagatctgcgtccttctgtctaatactgtctggtaatgccgtc 64
Query: 66 cat 68
|||
Sbjct: 65 cat 67
>33372_bta-mir-429:mirbase
Length = 84
Score = 85.7 bits (43), Expect = 3e-18
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
||||||||||||| |||||||||||| | | |||||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacacggttagatctgg-tccttctgtctaatactgtctggtaatgccgtc 74
Query: 66 cat 68
|||
Sbjct: 75 cat 77
>34094_ssc-mir-429:mirbase
Length = 81
Score = 79.8 bits (40), Expect = 2e-16
Identities = 59/64 (92%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 5 tgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgt 64
||||||||||| || |||||||||||| | | ||||||||||||||||||||||||||||
Sbjct: 13 tgtcttaccaggcacggttagatctggtt-cttctgtctaatactgtctggtaatgccgt 71
Query: 65 ccat 68
||||
Sbjct: 72 ccat 75
>26843_cfa-mir-429:mirbase
Length = 85
Score = 69.9 bits (35), Expect = 2e-13
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgt 64
||||||||||||| |||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 16 gtcttaccagacacggttagatctgggttctggtgtctaatactgtctggtaatgccgt 74
>28649_hsa-mir-429:mirbase
Length = 83
Score = 63.9 bits (32), Expect = 1e-11
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggc--cctctgtctaatactgtctggtaaaaccgtc 73
Query: 66 cat 68
|||
Sbjct: 74 cat 76
>31003_ppy-mir-429:mirbase
Length = 80
Score = 63.9 bits (32), Expect = 1e-11
Identities = 56/63 (88%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
||||||||||||||||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacatggttagacctggccg--tctgtctaatactgtctggtaaaaccgtc 73
Query: 66 cat 68
|||
Sbjct: 74 cat 76
>34400_dre-mir-429:mirbase
Length = 82
Score = 63.9 bits (32), Expect = 1e-11
Identities = 59/68 (86%)
Strand = Plus / Plus
Query: 1 tggatgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatg 60
|||| |||||||||||||||||||||| | | | ||||||||||||||||||||||
Sbjct: 9 tggacgtcttaccagacatggttagatgtaataacttgtgtctaatactgtctggtaatg 68
Query: 61 ccgtccat 68
||||||||
Sbjct: 69 ccgtccat 76
>25860_xtr-mir-429:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 56/62 (90%), Gaps = 2/62 (3%)
Strand = Plus / Plus
Query: 4 atgtcttaccagacatggttagatctggatgcatct-gtctaatactgtctggtaatgcc 62
||||||||||||||| |||||||||| | | | ||| |||||||||||||||||||||||
Sbjct: 14 atgtcttaccagacaaggttagatctagttac-tctcgtctaatactgtctggtaatgcc 72
Query: 63 gt 64
||
Sbjct: 73 gt 74
>27450_mdo-mir-429:mirbase
Length = 72
Score = 60.0 bits (30), Expect = 2e-10
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 5 tgtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgcc 62
|||||||||||||| ||||||||| | | ||||||||||||||||||||||||||
Sbjct: 7 tgtcttaccagacaaagttagatctcgctatttctgtctaatactgtctggtaatgcc 64
>34652_fru-mir-429:mirbase
Length = 76
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 39 tgtctaatactgtctggtaatgccgtccat 68
||||||||||||||||||||||||||||||
Sbjct: 47 tgtctaatactgtctggtaatgccgtccat 76
>34800_tni-mir-429:mirbase
Length = 87
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 39 tgtctaatactgtctggtaatgccgtccat 68
||||||||||||||||||||||||||||||
Sbjct: 49 tgtctaatactgtctggtaatgccgtccat 78
>26026_gga-mir-429:mirbase
Length = 84
Score = 58.0 bits (29), Expect = 8e-10
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 37 tctgtctaatactgtctggtaatgccgtc 65
|||||||||||||||||||||||||||||
Sbjct: 46 tctgtctaatactgtctggtaatgccgtc 74
>27902_mml-mir-429:mirbase
Length = 83
Score = 56.0 bits (28), Expect = 3e-09
Identities = 55/63 (87%), Gaps = 2/63 (3%)
Strand = Plus / Plus
Query: 6 gtcttaccagacatggttagatctggatgcatctgtctaatactgtctggtaatgccgtc 65
||||||||||||| ||||||| |||| | |||||||||||||||||||||| |||||
Sbjct: 16 gtcttaccagacacggttagacctggctc--tctgtctaatactgtctggtaaaaccgtc 73
Query: 66 cat 68
|||
Sbjct: 74 cat 76
>31552_oan-mir-429:mirbase
Length = 112
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 40 gtctaatactgtctggtaatgccgtc 65
||||||||||||||||||||||||||
Sbjct: 61 gtctaatactgtctggtaatgccgtc 86
>34401_dre-mir-429b:mirbase
Length = 110
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 39 tgtctaatactgtctggtaatgcc 62
|||||||||||| |||||||||||
Sbjct: 63 tgtctaatactgcctggtaatgcc 86
>34889_sko-mir-200:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 41 tctaatactgtctggtaatg 60
||||||||||||||||||||
Sbjct: 59 tctaatactgtctggtaatg 78
>24693_bfl-mir-200b:mirbase
Length = 98
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 42 ctaatactgtctggtaatg 60
|||||||||||||||||||
Sbjct: 58 ctaatactgtctggtaatg 76
