miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>33131_bta-mir-16b:mirbase
Length = 93
Score = 111 bits (56), Expect = 9e-26
Identities = 77/84 (91%)
Strand = Plus / Plus
Query: 3 tacttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaacccca 62
|||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |||
Sbjct: 3 tacttgttccgctgtagcagcacgtaaatattggcgtagtaaaataaatattaaacacca 62
Query: 63 atattattgtgctgcttaagcgtg 86
||||||||||||||||| ||||||
Sbjct: 63 atattattgtgctgctttagcgtg 86
>26947_eca-mir-16:mirbase
Length = 81
Score = 105 bits (53), Expect = 6e-24
Identities = 74/81 (91%)
Strand = Plus / Plus
Query: 8 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 67
||||||| ||||||||||||||||||||| ||||| ||||||| |||||| ||||||||
Sbjct: 1 gttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaatatt 60
Query: 68 attgtgctgcttaagcgtggc 88
|||||||||||| ||||||||
Sbjct: 61 attgtgctgctttagcgtggc 81
>32659_rno-mir-16:mirbase
Length = 95
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 3 tacttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaacccca 62
|||||||||||| ||||||||||||||||||||| ||||| ||||||| |||||| |||
Sbjct: 3 tacttgttccgctctagcagcacgtaaatattggcgtagtgaaataaatattaaacacca 62
Query: 63 atattattgtgctgctt 79
|||||||||||||||||
Sbjct: 63 atattattgtgctgctt 79
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 105 bits (53), Expect = 6e-24
Identities = 71/77 (92%)
Strand = Plus / Plus
Query: 10 tccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattat 69
||||| ||||||||||||||||||||| ||||||||||||| |||||| ||||||||||
Sbjct: 1 tccgctctagcagcacgtaaatattggcgtagtaaaataaatattaaacaccaatattat 60
Query: 70 tgtgctgcttaagcgtg 86
|||||||||| ||||||
Sbjct: 61 tgtgctgctttagcgtg 77
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 95.6 bits (48), Expect = 5e-21
Identities = 67/72 (93%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 8 gttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatatt 67
||||||||||||||||||||||||||||| || || ||| ||||||| ||||||||||||
Sbjct: 2 gttccgccctagcagcacgtaaatattggagt-gtcaaagaaaccttcaaccccaatatt 60
Query: 68 attgtgctgctt 79
||||||||||||
Sbjct: 61 attgtgctgctt 72
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 93.7 bits (47), Expect = 2e-20
Identities = 68/75 (90%)
Strand = Plus / Plus
Query: 5 cttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaat 64
|||||||| | ||||||||||||||||||||| ||||| ||||||| |||||| |||||
Sbjct: 5 cttgttccactctagcagcacgtaaatattggcgtagtgaaataaatattaaacaccaat 64
Query: 65 attattgtgctgctt 79
|||||||||||||||
Sbjct: 65 attattgtgctgctt 79
>26626_cfa-mir-16-2:mirbase
Length = 65
Score = 85.7 bits (43), Expect = 5e-18
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgctg 76
|||||||||||||||||||| ||||| ||||||| |||||| |||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattggcgtagtgaaataaaaattaaacaccaatattattgtgctg 60
Query: 77 ctt 79
|||
Sbjct: 61 ctt 63
>31429_oan-mir-16b:mirbase
Length = 101
Score = 85.7 bits (43), Expect = 5e-18
Identities = 74/84 (88%), Gaps = 4/84 (4%)
Strand = Plus / Plus
Query: 3 tacttgttccgccctagcagcacgtaaatattggtgtagtaaaataaaccttaaacccca 62
||||| || ||| ||||||||||||||||||||||||||| || | |||||||||||
Sbjct: 7 tacttattacgctctagcagcacgtaaatattggtgtagtgaagt----cttaaacccca 62
Query: 63 atattattgtgctgcttaagcgtg 86
||||||||||||||||| ||||||
Sbjct: 63 atattattgtgctgctttagcgtg 86
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 71.9 bits (36), Expect = 8e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
||||||||||||||||||||| ||||| ||||| | |||||| ||||||||| ||||||
Sbjct: 9 ctagcagcacgtaaatattggcgtagtgaaatatatattaaacaccaatattactgtgct 68
Query: 76 gctt 79
||||
Sbjct: 69 gctt 72
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 71.9 bits (36), Expect = 8e-14
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
||||||||||||||||||||| ||||| ||||| | |||||| ||||||||| ||||||
Sbjct: 8 ctagcagcacgtaaatattggcgtagtgaaatatatgttaaacaccaatattactgtgct 67
Query: 76 gctt 79
||||
Sbjct: 68 gctt 71
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 63.9 bits (32), Expect = 2e-11
Identities = 56/64 (87%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgtagtaaaataaaccttaaaccccaatattattgtgct 75
||||||||||||||||||||| ||||| ||||| |||||| ||||||||| ||||||
Sbjct: 9 ctagcagcacgtaaatattggcgtagtgaaatatgtattaaacaccaatattactgtgct 68
Query: 76 gctt 79
||||
Sbjct: 69 gctt 72
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 58.0 bits (29), Expect = 1e-09
Identities = 57/65 (87%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatatt-ggtgtagtaaaataaaccttaaaccccaatattattgtgc 74
||||||||||||||||||| || ||||| ||||| | |||||| ||||||||| |||||
Sbjct: 9 ctagcagcacgtaaatattgggcgtagtgaaatatatattaaacaccaatattactgtgc 68
Query: 75 tgctt 79
|||||
Sbjct: 69 tgctt 73
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 ctagcagcacgtaaatattggtgt 39
||||||||||||||||||||||||
Sbjct: 13 ctagcagcacgtaaatattggtgt 36
>25700_xtr-mir-16a:mirbase
Length = 82
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgt 36
>26399_tgu-mir-16a:mirbase
Length = 92
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 11 tagcagcacgtaaatattggtgt 33
>31394_lca-mir-16:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgt 36
>33130_bta-mir-16a:mirbase
Length = 89
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattggtgt 36
>34206_dre-mir-16a:mirbase
Length = 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattggtgt 39
|||||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattggtgt 35
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 10 tagcagcacgtaaatattgg 29
>25701_xtr-mir-16b:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>26625_cfa-mir-16-1:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>26948_eca-mir-16-2:mirbase
Length = 63
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
>27334_mdo-mir-16:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27480_age-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27541_lla-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27589_sla-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>27652_mml-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28172_mne-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28260_ggo-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>28362_hsa-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30044_ppa-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30148_ptr-mir-16-1:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>30753_ppy-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 14 tagcagcacgtaaatattgg 33
>31428_oan-mir-16a:mirbase
Length = 132
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 29 tagcagcacgtaaatattgg 48
>31430_oan-mir-16c:mirbase
Length = 120
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 13 gccctagcagcacgtaaata 32
||||||||||||||||||||
Sbjct: 24 gccctagcagcacgtaaata 43
>31777_mmu-mir-16-1:mirbase
Length = 93
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 16 tagcagcacgtaaatattgg 35
>33914_ssc-mir-16-2:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 9 tagcagcacgtaaatattgg 28
>34207_dre-mir-16b:mirbase
Length = 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 39 tagcagcacgtaaatattgg 58
>34547_fru-mir-16:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 13 tagcagcacgtaaatattgg 32
>34695_tni-mir-16:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 17 tagcagcacgtaaatattgg 36
||||||||||||||||||||
Sbjct: 1 tagcagcacgtaaatattgg 20
