miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26401_tgu-mir-16c:mirbase
Length = 72
Score = 107 bits (54), Expect = 1e-24
Identities = 63/66 (95%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaatactggagtgggggatcgcctgttgctctccagtattgcatt 60
||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct: 7 gctctagcagcacgtaaatactggagtttgggattgcctgttgctctccagtattgcatt 66
Query: 61 gctgct 66
||||||
Sbjct: 67 gctgct 72
>31430_oan-mir-16c:mirbase
Length = 120
Score = 75.8 bits (38), Expect = 4e-15
Identities = 62/66 (93%), Gaps = 3/66 (4%)
Strand = Plus / Plus
Query: 4 ctagcagcacgtaaatactggagtg-ggggatcgcct-gttgctctccagtattgcattg 61
|||||||||||||||||||||||| |||||| |||| ||||||||||||||||||||||
Sbjct: 27 ctagcagcacgtaaatactggagtttggggat-gcctcgttgctctccagtattgcattg 85
Query: 62 ctgctt 67
||||||
Sbjct: 86 ctgctt 91
>25702_xtr-mir-16c:mirbase
Length = 70
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagt 27
|||||||||||||||||||||||
Sbjct: 3 tagcagcacgtaaatactggagt 25
>26400_tgu-mir-16b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 4 ctagcagcacgtaaatactggagtg 28
||||||||||||||||| |||||||
Sbjct: 10 ctagcagcacgtaaatattggagtg 34
>25429_pma-mir-16:mirbase
Length = 75
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagtg 28
|||||||||||||||| |||||||
Sbjct: 10 tagcagcacgtaaatattggagtg 33
>26947_eca-mir-16:mirbase
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaata 20
||||||||||||||||||||
Sbjct: 6 gctctagcagcacgtaaata 25
>31429_oan-mir-16b:mirbase
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaata 20
||||||||||||||||||||
Sbjct: 17 gctctagcagcacgtaaata 36
>32659_rno-mir-16:mirbase
Length = 95
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaata 20
||||||||||||||||||||
Sbjct: 13 gctctagcagcacgtaaata 32
>33913_ssc-mir-16-1:mirbase
Length = 77
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gctctagcagcacgtaaata 20
||||||||||||||||||||
Sbjct: 4 gctctagcagcacgtaaata 23
>25894_gga-mir-16-1:mirbase
Length = 84
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 11 ctctagcagcacgtaaata 29
>27653_mml-mir-16-2:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaata 25
>28363_hsa-mir-16-2:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaata 25
>30149_ptr-mir-16-2:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 6 ctctagcagcacgtaaata 24
>30754_ppy-mir-16-2:mirbase
Length = 82
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 7 ctctagcagcacgtaaata 25
>31778_mmu-mir-16-2:mirbase
Length = 95
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 2 ctctagcagcacgtaaata 20
|||||||||||||||||||
Sbjct: 14 ctctagcagcacgtaaata 32
>34207_dre-mir-16b:mirbase
Length = 140
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagt 27
|||||||||||||||| ||||||
Sbjct: 39 tagcagcacgtaaatattggagt 61
>34547_fru-mir-16:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagt 27
|||||||||||||||| ||||||
Sbjct: 13 tagcagcacgtaaatattggagt 35
>34695_tni-mir-16:mirbase
Length = 72
Score = 38.2 bits (19), Expect = 8e-04
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 5 tagcagcacgtaaatactggagt 27
|||||||||||||||| ||||||
Sbjct: 1 tagcagcacgtaaatattggagt 23
