miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26411_tgu-mir-21:mirbase
Length = 72
Score = 143 bits (72), Expect = 3e-35
Identities = 72/72 (100%)
Strand = Plus / Plus
Query: 8 tcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 67
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcg 60
Query: 68 gtaggctgtctg 79
||||||||||||
Sbjct: 61 gtaggctgtctg 72
>31787_mmu-mir-21:mirbase
Length = 92
Score = 135 bits (68), Expect = 6e-33
Identities = 86/92 (93%)
Strand = Plus / Plus
Query: 1 tgtaccatcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaaca 60
||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgtaccaccttgtcggatagcttatcagactgatgttgactgttgaatctcatggcaaca 60
Query: 61 acagtcggtaggctgtctgacattttggtatc 92
|||||| | ||||||||||||||||||||||
Sbjct: 61 gcagtcgatgggctgtctgacattttggtatc 92
>31438_oan-mir-21:mirbase
Length = 114
Score = 131 bits (66), Expect = 1e-31
Identities = 84/90 (93%)
Strand = Plus / Plus
Query: 4 accatcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaaca 63
|||||||| |||||||||||||||||||||||||||||||| |||||| |||||||| ||
Sbjct: 15 accatcctatcggatagcttatcagactgatgttgactgttagatctcctggcaacagca 74
Query: 64 gtcggtaggctgtctgacattttggtatct 93
|||| | |||||||||||||||||||||||
Sbjct: 75 gtcgatgggctgtctgacattttggtatct 104
>31751_cgr-mir-21:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 tgtaccatcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaaca 60
||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgtaccaccttgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaaca 60
Query: 61 acagtcggtaggctgtctgacattttggtatc 92
|||||| | ||||||||||||||||||||||
Sbjct: 61 gcagtcgatgggctgtctgacattttggtatc 92
>32671_rno-mir-21:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 tgtaccatcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaaca 60
||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgtaccaccttgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaaca 60
Query: 61 acagtcggtaggctgtctgacattttggtatc 92
|||||| | ||||||||||||||||||||||
Sbjct: 61 gcagtcgatgggctgtctgacattttggtatc 92
>33923_ssc-mir-21:mirbase
Length = 92
Score = 127 bits (64), Expect = 2e-30
Identities = 85/92 (92%)
Strand = Plus / Plus
Query: 1 tgtaccatcctgtcggatagcttatcagactgatgttgactgttggatctcatggcaaca 60
||||||| | |||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1 tgtaccaccttgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaaca 60
Query: 61 acagtcggtaggctgtctgacattttggtatc 92
|||||| | ||||||||||||||||||||||
Sbjct: 61 gcagtcgatgggctgtctgacattttggtatc 92
>27341_mdo-mir-21:mirbase
Length = 74
Score = 115 bits (58), Expect = 6e-27
Identities = 70/74 (94%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct: 1 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacagcagtcgatg 60
Query: 71 ggctgtctgacatt 84
|||||||||||||
Sbjct: 61 agctgtctgacatt 74
>26957_eca-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>27488_age-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>27663_mml-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>28180_mne-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>28268_ggo-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>28372_hsa-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>30052_ppa-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>30159_ptr-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>30764_ppy-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacaccagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>33141_bta-mir-21:mirbase
Length = 72
Score = 103 bits (52), Expect = 2e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggta 70
|||||| |||||||||||||||||||||||||||| |||||||||||||| |||||| |
Sbjct: 1 tgtcgggtagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatg 60
Query: 71 ggctgtctgaca 82
||||||||||||
Sbjct: 61 ggctgtctgaca 72
>26635_cfa-mir-21:mirbase
Length = 60
Score = 87.7 bits (44), Expect = 1e-18
Identities = 56/60 (93%)
Strand = Plus / Plus
Query: 18 tagcttatcagactgatgttgactgttggatctcatggcaacaacagtcggtaggctgtc 77
|||||||||||||||||||||||||||| |||||||||||||| |||||| | |||||||
Sbjct: 1 tagcttatcagactgatgttgactgttgaatctcatggcaacagcagtcgatgggctgtc 60
>34220_dre-mir-21-1:mirbase
Length = 148
Score = 61.9 bits (31), Expect = 8e-11
Identities = 68/79 (86%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 11 tgtcggatagcttatcagactgatgttgactgttggat-ctcatggcaacaacagtcggt 69
|||| ||||||||||||||||| ||||| ||||| || | | ||| ||||||||| ||
Sbjct: 42 tgtcagatagcttatcagactggtgttggctgttacattcgcccggcgacaacagtctgt 101
Query: 70 aggctgtctgacattttgg 88
|||||||||||||||||||
Sbjct: 102 aggctgtctgacattttgg 120
>34554_fru-mir-21:mirbase
Length = 73
Score = 54.0 bits (27), Expect = 2e-08
Identities = 58/67 (86%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 17 atagcttatcagactgatgttgactgttg-gatctcatggcaacaacagtcggtaggctg 75
|||||||||||||||| ||||| ||||| ||| || ||| ||||||||| ||||||||
Sbjct: 7 atagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgtaggctg 66
Query: 76 tctgaca 82
|||||||
Sbjct: 67 tctgaca 73
>34702_tni-mir-21:mirbase
Length = 122
Score = 52.0 bits (26), Expect = 7e-08
Identities = 60/70 (85%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 17 atagcttatcagactgatgttgactgtt-ggatctcatggcaacaacagtcggtaggctg 75
|||||||||||||||| ||||| ||||| ||| || ||| ||||||||| | ||||||
Sbjct: 38 atagcttatcagactggtgttggctgttaagattgcaaggcgacaacagtctgaaggctg 97
Query: 76 tctgacattt 85
||||||||||
Sbjct: 98 tctgacattt 107
>34221_dre-mir-21-2:mirbase
Length = 127
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 69 taggctgtctgacattttgg 88
||||||||||||||||||||
Sbjct: 84 taggctgtctgacattttgg 103
