miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26425_tgu-mir-30c:mirbase
Length = 72
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 67 ctc 69
|||
Sbjct: 61 ctc 63
>26426_tgu-mir-30c:mirbase
Length = 72
Score = 125 bits (63), Expect = 4e-30
Identities = 63/63 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 60
Query: 67 ctc 69
|||
Sbjct: 61 ctc 63
>27684_mml-mir-30c-2:mirbase
Length = 72
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
Query: 64 actctc 69
||||||
Sbjct: 64 actctc 69
>33943_ssc-mir-30c-2:mirbase
Length = 80
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 7 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 66
Query: 64 actctc 69
||||||
Sbjct: 67 actctc 72
>27556_lla-mir-30c:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
Query: 64 actct 68
|||||
Sbjct: 64 actct 68
>28192_mne-mir-30c:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
Query: 64 actct 68
|||||
Sbjct: 64 actct 68
>28394_hsa-mir-30c-2:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
Query: 64 actct 68
|||||
Sbjct: 64 actct 68
>30180_ptr-mir-30c-2:mirbase
Length = 72
Score = 121 bits (61), Expect = 7e-29
Identities = 64/65 (98%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 4 tactgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgttt 63
Query: 64 actct 68
|||||
Sbjct: 64 actct 68
>26656_cfa-mir-30c-2:mirbase
Length = 62
Score = 115 bits (58), Expect = 4e-27
Identities = 61/62 (98%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtaagaaagctgggagaaggctgtttact 60
Query: 67 ct 68
||
Sbjct: 61 ct 62
>32691_rno-mir-30c-2:mirbase
Length = 84
Score = 115 bits (58), Expect = 4e-27
Identities = 64/66 (96%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 11 tactgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgttt 70
Query: 64 actctc 69
||||||
Sbjct: 71 actctc 76
>31809_mmu-mir-30c-2:mirbase
Length = 84
Score = 109 bits (55), Expect = 3e-25
Identities = 61/63 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||
Sbjct: 14 tgtaaacatcctacactctcagctgtgaaaagtaagaaagctgggagaaggctgtttact 73
Query: 67 ctc 69
|||
Sbjct: 74 ctc 76
>26977_eca-mir-30c-2:mirbase
Length = 60
Score = 103 bits (52), Expect = 2e-23
Identities = 58/60 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtggaaagtgagaaagctgggagaaggctgtttact 60
>33170_bta-mir-30f:mirbase
Length = 84
Score = 91.7 bits (46), Expect = 6e-20
Identities = 61/66 (92%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
||||||||||| |||||||||||||||||| | | | |||||||||||||||||||||||
Sbjct: 11 tactgtaaacaccctacactctcagctgtgcacagtgagaaagctgggagaaggctgttt 70
Query: 64 actctc 69
||||||
Sbjct: 71 actctc 76
>31452_oan-mir-30c:mirbase
Length = 122
Score = 89.7 bits (45), Expect = 2e-19
Identities = 64/69 (92%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 1 aggtactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctg 60
|||||||||||||||||||||||||||||||| | | | ||||||||||||||||||||
Sbjct: 25 aggtactgtaaacatcctacactctcagctgtag-atgtgagaaagctgggagaaggctg 83
Query: 61 tttactctc 69
|||||||||
Sbjct: 84 tttactctc 92
>25735_xtr-mir-30c-2:mirbase
Length = 78
Score = 85.7 bits (43), Expect = 4e-18
Identities = 61/66 (92%), Gaps = 2/66 (3%)
Strand = Plus / Plus
Query: 4 tactgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgttt 63
|||||||||||||||||||||||||||||||||| | ||||||||| |||||||||||
Sbjct: 11 tactgtaaacatcctacactctcagctgtggaaa--tacaaagctgggggaaggctgttt 68
Query: 64 actctc 69
||||||
Sbjct: 69 actctc 74
>25734_xtr-mir-30c-1:mirbase
Length = 89
Score = 60.0 bits (30), Expect = 2e-10
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtggaaactaagaaagctgggagaaggctgtttact 66
||||||||||||||||||||||||||| | | |||| |||||||||||| ||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtgaaca-taaggtggctgggagaagggtgtttact 75
Query: 67 ctccct 72
| ||||
Sbjct: 76 ccccct 81
>25918_gga-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>26655_cfa-mir-30c-1:mirbase
Length = 61
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 1 tgtaaacatcctacactctcagctgtg 27
>26976_eca-mir-30c:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>27683_mml-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>28393_hsa-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>30179_ptr-mir-30c-1:mirbase
Length = 88
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 16 tgtaaacatcctacactctcagctgtg 42
>30784_ppy-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>31808_mmu-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>32690_rno-mir-30c-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 17 tgtaaacatcctacactctcagctgtg 43
>33167_bta-mir-30c:mirbase
Length = 105
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 26 tgtaaacatcctacactctcagctgtg 52
>33942_ssc-mir-30c-1:mirbase
Length = 80
Score = 54.0 bits (27), Expect = 1e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctcagctgtg 36
>34249_dre-mir-30c:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctg 31
|||||||||||||||||||||||||
Sbjct: 11 tgtaaacatcctacactctcagctg 35
>25460_pma-mir-30f-1:mirbase
Length = 78
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||| ||||||||||||||||||
Sbjct: 10 tgtaaacaccctacactctcagctgtg 36
>25462_pma-mir-30g:mirbase
Length = 83
Score = 46.1 bits (23), Expect = 3e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctgtg 33
|||||||||||| ||||||||||||||
Sbjct: 12 tgtaaacatccttcactctcagctgtg 38
>25461_pma-mir-30f-2:mirbase
Length = 81
Score = 42.1 bits (21), Expect = 5e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctcagctg 31
|||||||| ||||||||||||||||
Sbjct: 11 tgtaaacaccctacactctcagctg 35
>34574_fru-mir-30c:mirbase
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctc 26
||||||||||||||||||||
Sbjct: 9 tgtaaacatcctacactctc 28
>34721_tni-mir-30c:mirbase
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 7 tgtaaacatcctacactctc 26
||||||||||||||||||||
Sbjct: 10 tgtaaacatcctacactctc 29
>25917_gga-mir-30b:mirbase
Length = 87
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
>34248_dre-mir-30b:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 8e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 6 ctgtaaacatcctacactc 24
|||||||||||||||||||
Sbjct: 15 ctgtaaacatcctacactc 33
