miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26431_tgu-mir-33:mirbase
Length = 70
Score = 97.6 bits (49), Expect = 9e-22
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgttcctgcagt 60
||||||||||||||||||||||||||||| ||||||| ||||||||||||| |||||||
Sbjct: 6 ctgtagtgcattgtagttgcattgcatgttgtggcagtgactgtgcaatgtttctgcagt 65
Query: 61 gcagt 65
|||||
Sbjct: 66 gcagt 70
>32696_rno-mir-33:mirbase
Length = 69
Score = 77.8 bits (39), Expect = 9e-16
Identities = 45/47 (95%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
|||||||||||||||||||||||| ||||||||| ||||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcagtacctgtgcaatgtt 52
>31814_mmu-mir-33:mirbase
Length = 69
Score = 71.9 bits (36), Expect = 5e-14
Identities = 48/52 (92%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
|||| |||||||||||||||||||||||| |||||| || ||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggcaatacctgtgcaatgtt 52
>26661_cfa-mir-33:mirbase
Length = 61
Score = 61.9 bits (31), Expect = 5e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
|||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 1 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtt 47
>33173_bta-mir-33a:mirbase
Length = 69
Score = 61.9 bits (31), Expect = 5e-11
Identities = 43/47 (91%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
|||||||||||||||||||||||| ||||| ||| | ||||||||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctggcggtacccgtgcaatgtt 52
>31458_oan-mir-33a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtg 30
||||||||||||||||||||||||||||||
Sbjct: 17 ctgtagtgcattgtagttgcattgcatgtg 46
>31459_oan-mir-33a:mirbase
Length = 97
Score = 60.0 bits (30), Expect = 2e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtg 30
||||||||||||||||||||||||||||||
Sbjct: 17 ctgtagtgcattgtagttgcattgcatgtg 46
>31460_oan-mir-33b:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgttcctgcagt 60
|||| ||||||||||||||||||||| || | ||||||| |||||||||||| ||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagt 68
Query: 61 gcagtacag 69
||| |||||
Sbjct: 69 gcattacag 77
>31461_oan-mir-33b:mirbase
Length = 85
Score = 58.0 bits (29), Expect = 8e-10
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgttcctgcagt 60
|||| ||||||||||||||||||||| || | ||||||| |||||||||||| ||||
Sbjct: 9 ctgtcgtgcattgtagttgcattgcacgttccggcagtactggtgcaatgttcccacagt 68
Query: 61 gcagtacag 69
||| |||||
Sbjct: 69 gcattacag 77
>26982_eca-mir-33a:mirbase
Length = 69
Score = 56.0 bits (28), Expect = 3e-09
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctggcagtaactgtgcaatgtt 52
|||| |||||||||||||||||||||||| ||||| ||| | |||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctggcggtacccatgcaatgtt 52
>24657_bfl-mir-33-1:mirbase
Length = 82
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgc 31
||||||||||||||||||||||||||
Sbjct: 7 gtgcattgtagttgcattgcatgtgc 32
>24658_bfl-mir-33-2:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 5e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgc 31
||||||||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgcatgtgc 41
>25740_xtr-mir-33a:mirbase
Length = 68
Score = 52.0 bits (26), Expect = 5e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtg 30
|||| |||||||||||||||||||||||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgtg 30
>28284_ggo-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctgg 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctgg 34
>28399_hsa-mir-33a:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctgg 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctgg 34
>30071_ppa-mir-33:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctgg 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctgg 34
>30185_ptr-mir-33a:mirbase
Length = 69
Score = 52.0 bits (26), Expect = 5e-08
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattgcatgtgctgg 34
|||| |||||||||||||||||||||||| ||||
Sbjct: 1 ctgtggtgcattgtagttgcattgcatgttctgg 34
>27689_mml-mir-33a:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctgg 34
|||||||||||||||||||||||| ||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctgg 34
>28196_mne-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctgg 34
|||||||||||||||||||||||| ||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctgg 34
>30789_ppy-mir-33:mirbase
Length = 69
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgtgctgg 34
|||||||||||||||||||||||| ||||
Sbjct: 6 gtgcattgtagttgcattgcatgttctgg 34
>37644_nvi-mir-33:mirbase
Length = 101
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 5 agtgcattgtagttgcattgcatg 28
||||||||||||||||||||||||
Sbjct: 30 agtgcattgtagttgcattgcatg 53
>37721_tca-mir-33:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgt 48
>37722_tca-mir-33:mirbase
Length = 102
Score = 48.1 bits (24), Expect = 8e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||||||||||||||||||
Sbjct: 25 gtgcattgtagttgcattgcatgt 48
>38738_cte-mir-33:mirbase
Length = 101
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcatg 43
>35357_ame-mir-33:mirbase
Length = 100
Score = 46.1 bits (23), Expect = 3e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatg 28
|||||||||||||||||||||||
Sbjct: 31 gtgcattgtagttgcattgcatg 53
>38857_lgi-mir-33:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcat 27
||||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgcat 42
>35530_bmo-mir-33:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 5 agtgcattgtagttgcattgca 26
||||||||||||||||||||||
Sbjct: 10 agtgcattgtagttgcattgca 31
>24815_cin-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 16 gtgcattgtagttgcattgca 36
>27359_mdo-mir-33:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 2 gtgcattgtagttgcattgca 22
>35004_dpu-mir-33:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 21 gtgcattgtagttgcattgca 41
>35183_aae-mir-33:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 9 gtgcattgtagttgcattgca 29
>36014_cqu-mir-33:mirbase
Length = 76
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgca 26
|||||||||||||||||||||
Sbjct: 3 gtgcattgtagttgcattgca 23
>25464_pma-mir-33a:mirbase
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ctgtagtgcattgtagttgcattg 24
|||| |||||||||||||||||||
Sbjct: 11 ctgtggtgcattgtagttgcattg 34
>25741_xtr-mir-33b:mirbase
Length = 69
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 6 gtgcattgtagttgcattgcatgt 29
||||||||| ||||||||||||||
Sbjct: 6 gtgcattgttgttgcattgcatgt 29
