miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26439_tgu-mir-99-2:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 3 aattggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttct 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aattggcataaacccgtagatccgatcttgtgttgaaacgcactgcacaagctcgcttct 60
Query: 63 atgggtctgtg 73
|||||||||||
Sbjct: 61 atgggtctgtg 71
>26438_tgu-mir-99-1:mirbase
Length = 71
Score = 133 bits (67), Expect = 2e-32
Identities = 70/71 (98%)
Strand = Plus / Plus
Query: 3 aattggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttct 62
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 1 aattggcataaacccgtagatccgatcttgtgttgaaacgcactgcacaagctcgcttct 60
Query: 63 atgggtctgtg 73
|||||||||||
Sbjct: 61 atgggtctgtg 71
>27562_lla-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>27702_mml-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>28201_mne-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>28292_ggo-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>28412_hsa-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>30079_ppa-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>30196_ptr-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>33185_bta-mir-99a:mirbase
Length = 81
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>33956_ssc-mir-99a:mirbase
Length = 80
Score = 117 bits (59), Expect = 1e-27
Identities = 71/75 (94%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || |||||||||||||||||
Sbjct: 3 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgcttcta 62
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 63 tgggtctgtgtcagt 77
>26995_eca-mir-99a-2:mirbase
Length = 81
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || ||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggacctcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>30802_ppy-mir-99a:mirbase
Length = 81
Score = 109 bits (55), Expect = 3e-25
Identities = 70/75 (93%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| | || || || |||||||||||||||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtaaagtggaccgcacaagctcgcttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||||||||
Sbjct: 64 tgggtctgtgtcagt 78
>32706_rno-mir-99a:mirbase
Length = 81
Score = 101 bits (51), Expect = 7e-23
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 4 attggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttcta 63
||||||||||||||||||||||||||||||| |||| || || ||||||||||| |||||
Sbjct: 4 attggcataaacccgtagatccgatcttgtggtgaagtggaccgcacaagctcgtttcta 63
Query: 64 tgggtctgtgtcagt 78
|||||||||| ||||
Sbjct: 64 tgggtctgtggcagt 78
>31470_oan-mir-99:mirbase
Length = 102
Score = 91.7 bits (46), Expect = 7e-20
Identities = 67/74 (90%)
Strand = Plus / Plus
Query: 5 ttggcataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctat 64
|||||||||||||||||||||||||||||| |||| || | | ||||||||||| ||| |
Sbjct: 16 ttggcataaacccgtagatccgatcttgtggtgaagtgaaatacacaagctcgcctctct 75
Query: 65 gggtctgtgtcagt 78
||||||||||||||
Sbjct: 76 gggtctgtgtcagt 89
>26673_cfa-mir-99a-1:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 4e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctg 71
|||||||||||||||||||||| |||| || || |||||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtggtgaagtggacggcacaagctcgcttctatgggtctg 59
>31825_mmu-mir-99a:mirbase
Length = 65
Score = 81.8 bits (41), Expect = 7e-17
Identities = 59/65 (90%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggt 68
|||||||||||||||||||||||||| |||| || || || |||||||| ||||||||||
Sbjct: 1 cataaacccgtagatccgatcttgtggtgaagtggaccgcgcaagctcgtttctatgggt 60
Query: 69 ctgtg 73
|||||
Sbjct: 61 ctgtg 65
>25754_xtr-mir-99:mirbase
Length = 71
Score = 79.8 bits (40), Expect = 3e-16
Identities = 61/68 (89%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggt 68
|||||||||||||||||||||||||| |||| | | ||| |||||||| ||||||||||
Sbjct: 4 cataaacccgtagatccgatcttgtggtgaattcctttgctcaagctcgtttctatgggt 63
Query: 69 ctgtgtca 76
||||||||
Sbjct: 64 ctgtgtca 71
>24672_bfl-mir-100:mirbase
Length = 100
Score = 50.1 bits (25), Expect = 2e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtgttg 37
||||||||||||||||||| |||||||||
Sbjct: 17 cataaacccgtagatccgaacttgtgttg 45
>34261_dre-mir-99-1:mirbase
Length = 84
Score = 46.1 bits (23), Expect = 4e-06
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgttgaaatgcactgcacaagctcgcttctatgggtctgt 72
|||||||||||||||||||||| | | | | ||||||||||| |||||||||||| |
Sbjct: 14 aacccgtagatccgatcttgtgataagtttgatggcacaagctcgattctatgggtctct 73
Query: 73 gtc 75
|||
Sbjct: 74 gtc 76
>34262_dre-mir-99-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||||||||||
Sbjct: 11 aaacccgtagatccgatcttgtg 33
>25755_xtr-mir-100:mirbase
Length = 76
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 9 cataaacccgtagatccgatcttgtg 34
||||||||||||||||||| ||||||
Sbjct: 6 cataaacccgtagatccgaacttgtg 31
>26674_cfa-mir-99a-2:mirbase
Length = 57
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtg 34
||||||||||||||||||||||
Sbjct: 1 aacccgtagatccgatcttgtg 22
>34877_sko-mir-100:mirbase
Length = 101
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 taaacccgtagatccgatcttgtgtt 36
||||||||||||||||| ||||||||
Sbjct: 19 taaacccgtagatccgaacttgtgtt 44
>38112_bma-mir-100b:mirbase
Length = 91
Score = 44.1 bits (22), Expect = 1e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgttga 38
||||||||||||||| ||||||||||
Sbjct: 21 aacccgtagatccgaacttgtgttga 46
>38866_lgi-mir-100:mirbase
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 ataaacccgtagatccgatcttgtg 34
|||||||||||||||||| ||||||
Sbjct: 18 ataaacccgtagatccgaacttgtg 42
>25468_pma-mir-100a:mirbase
Length = 89
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 16 aaacccgtagatccgaacttgtg 38
>25470_pma-mir-100c:mirbase
Length = 88
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Minus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 71 aaacccgtagatccgaacttgtg 49
>25930_gga-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>26440_tgu-mir-100-1:mirbase
Length = 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 10 aaacccgtagatccgaacttgtg 32
>26441_tgu-mir-100-2:mirbase
Length = 111
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 10 aaacccgtagatccgaacttgtg 32
>27364_mdo-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>27501_age-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>27563_lla-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>27610_sla-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>27704_mml-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>28293_ggo-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>28414_hsa-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>30080_ppa-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>30198_ptr-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>30803_ppy-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>31471_oan-mir-100:mirbase
Length = 81
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 13 aaacccgtagatccgaacttgtg 35
>31827_mmu-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>32708_rno-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>33187_bta-mir-100:mirbase
Length = 76
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 12 aaacccgtagatccgaacttgtg 34
>33958_ssc-mir-100:mirbase
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 15 aaacccgtagatccgaacttgtg 37
>34263_dre-mir-100-1:mirbase
Length = 96
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 23 aaacccgtagatccgaacttgtg 45
>34264_dre-mir-100-2:mirbase
Length = 75
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 10 aaacccgtagatccgaacttgtg 32
>34579_fru-mir-100:mirbase
Length = 63
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 4 aaacccgtagatccgaacttgtg 26
>34726_tni-mir-100:mirbase
Length = 63
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 4 aaacccgtagatccgaacttgtg 26
>34970_isc-mir-100:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgt 35
||||||||||||||| |||||||
Sbjct: 21 aacccgtagatccgaacttgtgt 43
>35010_dpu-mir-100:mirbase
Length = 101
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 13 aacccgtagatccgatcttgtgt 35
||||||||||||||| |||||||
Sbjct: 21 aacccgtagatccgaacttgtgt 43
>35288_aga-mir-100:mirbase
Length = 92
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 12 aaacccgtagatccgatcttgtg 34
|||||||||||||||| ||||||
Sbjct: 14 aaacccgtagatccgaacttgtg 36
