miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26461_tgu-mir-130c:mirbase
Length = 112
Score = 119 bits (60), Expect = 4e-28
Identities = 84/91 (92%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 2 tgagcggtgtctgtccagcgccctttttatgttgtactactagtgatcat--acacaaag 59
|||| ||||||||||||| |||||||||||||||||||||| ||||| || ||| ||||
Sbjct: 21 tgagtggtgtctgtccagtgccctttttatgttgtactactggtgatgatgcacaaaaag 80
Query: 60 cagtgcaatgttaaaagggcattggccagca 90
|||||||||||||||||||||||||||||||
Sbjct: 81 cagtgcaatgttaaaagggcattggccagca 111
>31486_oan-mir-130b:mirbase
Length = 129
Score = 107 bits (54), Expect = 1e-24
Identities = 81/89 (91%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 2 tgagcggtgtctgtccagcgccctttttatgttgtactactagtgatcat--acacaaag 59
|||| ||| |||||| || ||||||||||||||||||||||||||||| | ||| ||||
Sbjct: 21 tgagtggtatctgtctagtgccctttttatgttgtactactagtgatcttgcacaaaaag 80
Query: 60 cagtgcaatgttaaaagggcattggccag 88
|||||||||||||||||||||||||||||
Sbjct: 81 cagtgcaatgttaaaagggcattggccag 109
>25772_xtr-mir-130a:mirbase
Length = 83
Score = 103 bits (52), Expect = 2e-23
Identities = 74/81 (91%), Gaps = 4/81 (4%)
Strand = Plus / Plus
Query: 12 ctgtccagcgccctttttatgttgtactactagtgatcatacac----aaagcagtgcaa 67
|||||||| |||||||||||||||||||||||||| ||| |||| ||||||||||||
Sbjct: 1 ctgtccagtgccctttttatgttgtactactagtggtcacacacaaaaaaagcagtgcaa 60
Query: 68 tgttaaaagggcattggccag 88
|||||||||||||||||||||
Sbjct: 61 tgttaaaagggcattggccag 81
>34289_dre-mir-130a-1:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 aaagcagtgcaatgttaaaagggcattggccag 88
|||||||||||||||||||||||||||||||||
Sbjct: 50 aaagcagtgcaatgttaaaagggcattggccag 82
>34290_dre-mir-130a-2:mirbase
Length = 85
Score = 65.9 bits (33), Expect = 5e-12
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 56 aaagcagtgcaatgttaaaagggcattggccag 88
|||||||||||||||||||||||||||||||||
Sbjct: 50 aaagcagtgcaatgttaaaagggcattggccag 82
>33979_ssc-mir-130a:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcca 87
||||||||||||||||||||||||||||||
Sbjct: 48 agcagtgcaatgttaaaagggcattggcca 77
>27728_mml-mir-130a:mirbase
Length = 81
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>28211_mne-mir-130a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>28303_ggo-mir-130a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>28442_hsa-mir-130a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>30090_ppa-mir-130a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>30218_ptr-mir-130a:mirbase
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 52 agcagtgcaatgttaaaagggcattggcc 80
>30827_ppy-mir-130a:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggcc 81
>33211_bta-mir-130a:mirbase
Length = 89
Score = 56.0 bits (28), Expect = 5e-09
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||||||||||||||||||||
Sbjct: 53 agcagtgcaatgttaaaagggcattggc 80
>32731_rno-mir-130a:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||| ||||
Sbjct: 53 agcagtgcaatgttaaaagggcatcggcc 81
>33089_rno-mir-3590:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||| ||||
Sbjct: 29 agcagtgcaatgttaaaagggcatcggcc 1
>33090_rno-mir-3590:mirbase
Length = 74
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 58 agcagtgcaatgttaaaagggcattggcc 86
|||||||||||||||||||||||| ||||
Sbjct: 29 agcagtgcaatgttaaaagggcatcggcc 1
>25774_xtr-mir-130c:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 43 agcagtgcaatattaaaagggcattggc 70
>25947_gga-mir-130a:mirbase
Length = 83
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatattaaaagggcattggc 77
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 13 tgtccagcgccctttttatgttgtactact 42
||||||| ||||||||| ||||||||||||
Sbjct: 7 tgtccagagccctttttctgttgtactact 36
>26459_tgu-mir-130a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 39 agcagtgcaatattaaaagggcattggc 66
>26698_cfa-mir-130a:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcat 81
||||||||||||||||||||||||
Sbjct: 39 agcagtgcaatgttaaaagggcat 62
>27022_eca-mir-130a:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcat 81
||||||||||||||||||||||||
Sbjct: 41 agcagtgcaatgttaaaagggcat 64
>27380_mdo-mir-130a:mirbase
Length = 76
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||||| ||||||||||||||
Sbjct: 47 agcagtgcaatgtaaaaagggcattggc 74
>31856_mmu-mir-130a:mirbase
Length = 64
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcat 81
||||||||||||||||||||||||
Sbjct: 40 agcagtgcaatgttaaaagggcat 63
>34292_dre-mir-130c-1:mirbase
Length = 141
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 78 agcagtgcaatattaaaagggcattggc 105
>34293_dre-mir-130c-2:mirbase
Length = 81
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 48 agcagtgcaatattaaaagggcattggc 75
>34595_fru-mir-130:mirbase
Length = 79
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 50 agcagtgcaatattaaaagggcattggc 77
>34742_tni-mir-130:mirbase
Length = 74
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcattggc 85
||||||||||| ||||||||||||||||
Sbjct: 47 agcagtgcaatattaaaagggcattggc 74
>25480_pma-mir-130b:mirbase
Length = 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 agtgcaatgttaaaagggcattgg 84
|||||||||| |||||||||||||
Sbjct: 52 agtgcaatgtgaaaagggcattgg 75
>31487_oan-mir-130c:mirbase
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 58 agcagtgcaatgttaaaagggcat 81
|||||||||||| |||||||||||
Sbjct: 51 agcagtgcaatggtaaaagggcat 74
