miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26467_tgu-mir-135b:mirbase
Length = 73
Score = 117 bits (59), Expect = 1e-27
Identities = 62/63 (98%)
Strand = Plus / Plus
Query: 13 tgtatggctttttattcctatgtgattatacatcccgcttcatatagggattgaagccgt 72
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 9 tgtatggctttttattcctatgtgattatacatcccacttcatatagggattgaagccgt 68
Query: 73 gca 75
|||
Sbjct: 69 gca 71
>31863_mmu-mir-135a-1:mirbase
Length = 90
Score = 65.9 bits (33), Expect = 4e-12
Identities = 64/73 (87%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
|||||||||| || ||||||||||||||||||||||||| || | ||| |||||||||
Sbjct: 3 gcctcactgttctctatggctttttattcctatgtgattctattgctcgc-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>26705_cfa-mir-135a-1:mirbase
Length = 87
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattttactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>27512_age-mir-135-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>27574_lla-mir-135-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>27735_mml-mir-135a-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>28449_hsa-mir-135a-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>30093_ppa-mir-135-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>30224_ptr-mir-135a-1:mirbase
Length = 89
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>30835_ppy-mir-135a-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>33218_bta-mir-135a-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | | |||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctactgctcac-tcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>33986_ssc-mir-135-1:mirbase
Length = 90
Score = 58.0 bits (29), Expect = 1e-09
Identities = 63/73 (86%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 1 gcctcactgtcctgtatggctttttattcctatgtgattatacatcccgcttcatatagg 60
||||| |||| || ||||||||||||||||||||||||| ||| | | ||||||||||
Sbjct: 3 gcctcgctgttctctatggctttttattcctatgtgattctac-tgctcattcatatagg 61
Query: 61 gattgaagccgtg 73
||||| |||||||
Sbjct: 62 gattggagccgtg 74
>27029_eca-mir-135a:mirbase
Length = 60
Score = 54.0 bits (27), Expect = 2e-08
Identities = 52/59 (88%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgattatacatcccgcttcatatagggattgaagccgtg 73
||||||||||||||||||||||||| ||| | | | |||||||||||||| |||||||
Sbjct: 2 tatggctttttattcctatgtgattctactgctcac-tcatatagggattggagccgtg 59
>25487_pma-mir-135a:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39
>25781_xtr-mir-135-2:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgatt 40
>25956_gga-mir-135a-3:mirbase
Length = 96
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtgatt 40
>26466_tgu-mir-135a-2:mirbase
Length = 86
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39
>31492_oan-mir-135b:mirbase
Length = 114
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||||||||||||||||||
Sbjct: 31 tatggctttttattcctatgtgatt 55
>25780_xtr-mir-135-1:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>25955_gga-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>26465_tgu-mir-135a-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgat 34
>26706_cfa-mir-135a-2:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgat 25
>26707_cfa-mir-135a-2:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgat 25
>27030_eca-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27383_mdo-mir-135a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27513_age-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27575_lla-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27736_mml-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>28306_ggo-mir-135:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>28450_hsa-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30094_ppa-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30225_ptr-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30834_ppy-mir-135:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>31491_oan-mir-135a:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 29 tatggctttttattcctatgtgat 52
>31864_mmu-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>32737_rno-mir-135a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>33219_bta-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>33987_ssc-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgat 38
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>34300_dre-mir-135a:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtga 37
|||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtga 38
>25488_pma-mir-135b:mirbase
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 13 tgtatggctttttattcctatgtgat 38
|||||||||||||||||||| |||||
Sbjct: 10 tgtatggctttttattcctacgtgat 35
>33220_bta-mir-135b:mirbase
Length = 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatta 40
|||||||||| |||||||||||||||
Sbjct: 14 tatggcttttcattcctatgtgatta 39
>34304_dre-mir-135c-3:mirbase
Length = 127
Score = 44.1 bits (22), Expect = 2e-05
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 6 actgtcctgtatggctttttattcctatgtgatt 39
||||| || ||||||||| |||||||||||||||
Sbjct: 27 actgtgctttatggctttctattcctatgtgatt 60
>34599_fru-mir-135b:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctgtatggctttttattcctat 33
||||||||||||||||||||||
Sbjct: 13 ctgtatggctttttattcctat 34
>34746_tni-mir-135b:mirbase
Length = 83
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 12 ctgtatggctttttattcctat 33
||||||||||||||||||||||
Sbjct: 11 ctgtatggctttttattcctat 32
>26708_cfa-mir-135b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 15 tatggcttttcattcctatgtgatt 39
>27031_eca-mir-135b:mirbase
Length = 89
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 15 tatggcttttcattcctatgtgatt 39
>27384_mdo-mir-135b:mirbase
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 18 tatggcttttcattcctatgtgatt 42
>27737_mml-mir-135b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>28451_hsa-mir-135b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>30226_ptr-mir-135b:mirbase
Length = 96
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>30836_ppy-mir-135b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>31865_mmu-mir-135b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>32738_rno-mir-135b:mirbase
Length = 97
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
|||||||||| ||||||||||||||
Sbjct: 16 tatggcttttcattcctatgtgatt 40
>34302_dre-mir-135c-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35
>34303_dre-mir-135c-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35
>34598_fru-mir-135a:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35
>34745_tni-mir-135a:mirbase
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 15 tatggctttttattcctatgtgatt 39
||||||||| |||||||||||||||
Sbjct: 11 tatggctttctattcctatgtgatt 35
>34301_dre-mir-135b:mirbase
Length = 82
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 14 gtatggctttttattcctat 33
||||||||||||||||||||
Sbjct: 12 gtatggctttttattcctat 31
