miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26466_tgu-mir-135a-2:mirbase
Length = 86
Score = 133 bits (67), Expect = 3e-32
Identities = 76/79 (96%)
Strand = Plus / Plus
Query: 2 cctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtagg 61
||||||||||||| |||||||||||||||||||||||||||||| || ||||||||||||
Sbjct: 1 cctctgctgtggtttatggctttttattcctatgtgattgctttcccgaactcatgtagg 60
Query: 62 gcgaaaagccatgggctac 80
|||||||||||||||||||
Sbjct: 61 gcgaaaagccatgggctac 79
>27384_mdo-mir-135b:mirbase
Length = 100
Score = 115 bits (58), Expect = 6e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 5 ctctgctgtggcctatggcttttcattcctatgtgattgctgttcccaactcatgtaggg 64
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 65 ctaaaagccatgggctac 82
>32738_rno-mir-135b:mirbase
Length = 97
Score = 115 bits (58), Expect = 6e-27
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| |||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgttccgaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>26708_cfa-mir-135b:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| || |||| ||||||||||
Sbjct: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgtttctaattcatgtaggg 61
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 62 ctaaaagccatgggctac 79
>27031_eca-mir-135b:mirbase
Length = 89
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 2 ctctgctgtggcctatggcttttcattcctatgtgattgctgttctaaactcatgtaggg 61
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 62 ctaaaagccatgggctac 79
>27737_mml-mir-135b:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>28451_hsa-mir-135b:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>30226_ptr-mir-135b:mirbase
Length = 96
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>30836_ppy-mir-135b:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| | || |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgtcccaaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>31865_mmu-mir-135b:mirbase
Length = 97
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| ||||||||||||||||| ||| |||||||||||||
Sbjct: 3 ctctgctgtggcctatggcttttcattcctatgtgattgctgctccgaactcatgtaggg 62
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 63 ctaaaagccatgggctac 80
>33220_bta-mir-135b:mirbase
Length = 95
Score = 107 bits (54), Expect = 1e-24
Identities = 72/78 (92%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||| |||||||||||||| || |||| |||||||||||||
Sbjct: 1 ctctgctgtggcctatggcttttcattcctatgtgattactgttccaaactcatgtaggg 60
Query: 63 cgaaaagccatgggctac 80
| ||||||||||||||||
Sbjct: 61 ctaaaagccatgggctac 78
>31492_oan-mir-135b:mirbase
Length = 114
Score = 91.7 bits (46), Expect = 9e-20
Identities = 70/78 (89%)
Strand = Plus / Plus
Query: 3 ctctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtaggg 62
||||||||||| ||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 18 ctctgctgtggcctatggctttttattcctatgtgattgctgctttgaactcatgtaggg 77
Query: 63 cgaaaagccatgggctac 80
| |||||||||||||||
Sbjct: 78 ctgaaagccatgggctac 95
>25781_xtr-mir-135-2:mirbase
Length = 88
Score = 71.9 bits (36), Expect = 8e-14
Identities = 73/84 (86%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 5 ctgctgtggtctatggctttttattcctatgtgattgcttttcctaactcatgtagggcg 64
|||||| ||| ||||||||||||||||||||||||||| |||||||| ||| ||||||
Sbjct: 5 ctgctgaggtatatggctttttattcctatgtgattgc-tttcctaattcacatagggca 63
Query: 65 aaaagccatgggctactcagggga 88
||||||||| ||| | |||||||
Sbjct: 64 gaaagccatgtgctgcacagggga 87
>25487_pma-mir-135a:mirbase
Length = 86
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgattgctt 44
|||||||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgattgctt 43
>26705_cfa-mir-135a-1:mirbase
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>27512_age-mir-135-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>27574_lla-mir-135-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>27735_mml-mir-135a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>28449_hsa-mir-135a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>30093_ppa-mir-135-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>30224_ptr-mir-135a-1:mirbase
Length = 89
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>30835_ppy-mir-135a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>31863_mmu-mir-135a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>33218_bta-mir-135a-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>33986_ssc-mir-135-1:mirbase
Length = 90
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 14 tctatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||||
Sbjct: 15 tctatggctttttattcctatgtgatt 41
>27029_eca-mir-135a:mirbase
Length = 60
Score = 52.0 bits (26), Expect = 7e-08
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 15 ctatggctttttattcctatgtgatt 40
||||||||||||||||||||||||||
Sbjct: 1 ctatggctttttattcctatgtgatt 26
>25954_gga-mir-135a-1:mirbase
Length = 88
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||
Sbjct: 15 tatggctttttattcctatgtgatt 39
>26467_tgu-mir-135b:mirbase
Length = 73
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgatt 40
|||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgatt 35
>25780_xtr-mir-135-1:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>25955_gga-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>26465_tgu-mir-135a-1:mirbase
Length = 73
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 11 tatggctttttattcctatgtgat 34
>26706_cfa-mir-135a-2:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgat 25
>26707_cfa-mir-135a-2:mirbase
Length = 62
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 2 tatggctttttattcctatgtgat 25
>27030_eca-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27383_mdo-mir-135a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27513_age-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27575_lla-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>27736_mml-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>28306_ggo-mir-135:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>28450_hsa-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30094_ppa-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30225_ptr-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>30834_ppy-mir-135:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>31491_oan-mir-135a:mirbase
Length = 109
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 29 tatggctttttattcctatgtgat 52
>31864_mmu-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>32737_rno-mir-135a:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>33219_bta-mir-135a-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>33987_ssc-mir-135-2:mirbase
Length = 100
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
||||||||||||||||||||||||
Sbjct: 23 tatggctttttattcctatgtgat 46
>34300_dre-mir-135a:mirbase
Length = 98
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtga 38
|||||||||||||||||||||||
Sbjct: 16 tatggctttttattcctatgtga 38
>34302_dre-mir-135c-1:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 tgctgtggtctatggctttttattcctatgtgatt 40
||||||| | ||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34303_dre-mir-135c-2:mirbase
Length = 80
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 tgctgtggtctatggctttttattcctatgtgatt 40
||||||| | ||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34598_fru-mir-135a:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 tgctgtggtctatggctttttattcctatgtgatt 40
||||||| | ||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34745_tni-mir-135a:mirbase
Length = 79
Score = 46.1 bits (23), Expect = 5e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 6 tgctgtggtctatggctttttattcctatgtgatt 40
||||||| | ||||||||| |||||||||||||||
Sbjct: 1 tgctgtgttttatggctttctattcctatgtgatt 35
>34304_dre-mir-135c-3:mirbase
Length = 127
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgatt 40
||||||||| |||||||||||||||
Sbjct: 36 tatggctttctattcctatgtgatt 60
>25488_pma-mir-135b:mirbase
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 16 tatggctttttattcctatgtgat 39
|||||||||||||||||| |||||
Sbjct: 12 tatggctttttattcctacgtgat 35
