miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26469_tgu-mir-138-1:mirbase
Length = 73
Score = 127 bits (64), Expect = 2e-30
Identities = 67/68 (98%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaac 74
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4 gtgcaacagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaac 63
Query: 75 accagggt 82
||||||||
Sbjct: 64 accagggt 71
>33223_bta-mir-138-1:mirbase
Length = 97
Score = 101 bits (51), Expect = 9e-23
Identities = 60/63 (95%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 79
||||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 19 gcagctggtgttgtgaatcaggccgtcgccaatcagagaacggctacttcacaacaccag 78
Query: 80 ggt 82
|||
Sbjct: 79 ggt 81
>25785_xtr-mir-138:mirbase
Length = 85
Score = 99.6 bits (50), Expect = 4e-22
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 17 gcagcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacac 76
||||||||||||||||||||||||||||| |||| || || |||||||||||||||||||
Sbjct: 10 gcagcagctggtgttgtgaatcaggccgtgaccactcagaaaacggctacttcacaacac 69
Query: 77 cagggt 82
||||||
Sbjct: 70 cagggt 75
>32741_rno-mir-138-1:mirbase
Length = 99
Score = 95.6 bits (48), Expect = 5e-21
Identities = 66/72 (91%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 80
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
Query: 81 gtggcactgcac 92
|| ||||||||
Sbjct: 82 gtctcactgcac 93
>28454_hsa-mir-138-1:mirbase
Length = 99
Score = 91.7 bits (46), Expect = 9e-20
Identities = 58/62 (93%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccag 79
|||||||||||||||||||||||||| ||| || |||||||||||||||||||||||||
Sbjct: 21 gcagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccag 80
Query: 80 gg 81
||
Sbjct: 81 gg 82
>26711_cfa-mir-138a:mirbase
Length = 62
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 22 agctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccaggg 81
|||||||||||||||||||||||| ||| || |||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccaggg 60
Query: 82 t 82
|
Sbjct: 61 t 61
>31868_mmu-mir-138-1:mirbase
Length = 99
Score = 89.7 bits (45), Expect = 3e-19
Identities = 57/61 (93%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 80
||||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 22 cagctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 81
Query: 81 g 81
|
Sbjct: 82 g 82
>27035_eca-mir-138-2:mirbase
Length = 59
Score = 85.7 bits (43), Expect = 5e-18
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 22 agctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttcacaacaccagg 80
|||||||||||||||||||||||| ||| || ||||||||||||||||||||||||||
Sbjct: 1 agctggtgttgtgaatcaggccgttgccaatcagagaacggctacttcacaacaccagg 59
>31495_oan-mir-138-1:mirbase
Length = 137
Score = 77.8 bits (39), Expect = 1e-15
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 19 agcagctggtgttgtgaatcaggccgtcaccagtcggagaacggctacttc 69
|||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct: 87 agcagctggtgttgtgaatcaggccgtcgccaatctgagaacggctacttc 137
>25492_pma-mir-138b:mirbase
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 9 ggtgccgtgcagcagctggtgttgtgaatcaggc 42
|||||||||| |||||||||||||||||||||||
Sbjct: 2 ggtgccgtgccgcagctggtgttgtgaatcaggc 35
>31496_oan-mir-138-2:mirbase
Length = 115
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 20 gtgctgcagctggtgttgtgaatcaggccg 49
>34307_dre-mir-138:mirbase
Length = 87
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 gtgcagcagctggtgttgtgaatcaggccg 44
|||| |||||||||||||||||||||||||
Sbjct: 4 gtgctgcagctggtgttgtgaatcaggccg 33
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 cggctacttcacaacaccagggtggcac 87
|||||| |||||||||||||||||||||
Sbjct: 56 cggctatttcacaacaccagggtggcac 83
>25491_pma-mir-138a:mirbase
Length = 80
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>25960_gga-mir-138-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>26470_tgu-mir-138-2:mirbase
Length = 93
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 9 gcagctggtgttgtgaatcaggccg 33
>27034_eca-mir-138:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 8 gcagctggtgttgtgaatcaggccg 32
>27386_mdo-mir-138:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>27740_mml-mir-138:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 8 gcagctggtgttgtgaatcaggccg 32
>28455_hsa-mir-138-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 8 gcagctggtgttgtgaatcaggccg 32
>30229_ptr-mir-138:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>30839_ppy-mir-138-2:mirbase
Length = 84
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 8 gcagctggtgttgtgaatcaggccg 32
>32742_rno-mir-138-2:mirbase
Length = 82
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>33224_bta-mir-138-2:mirbase
Length = 83
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 7 gcagctggtgttgtgaatcaggccg 31
>34601_fru-mir-138:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 4 gcagctggtgttgtgaatcaggccg 28
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 cggctacttcacaacaccagggtggcac 87
|||||| |||||||||||||||||||||
Sbjct: 51 cggctatttcacaacaccagggtggcac 78
>34748_tni-mir-138:mirbase
Length = 79
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 gcagctggtgttgtgaatcaggccg 44
|||||||||||||||||||||||||
Sbjct: 4 gcagctggtgttgtgaatcaggccg 28
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 60 cggctacttcacaacaccagggtggcac 87
|||||| |||||||||||||||||||||
Sbjct: 51 cggctatttcacaacaccagggtggcac 78
>31869_mmu-mir-138-2:mirbase
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 21 cagctggtgttgtgaatcaggccg 44
||||||||||||||||||||||||
Sbjct: 1 cagctggtgttgtgaatcaggccg 24
