miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25963_gga-mir-142:mirbase
Length = 88
Score = 174 bits (88), Expect = 7e-45
Identities = 88/88 (100%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 61 ttcctactttatggatgagtgtactgtg 88
>27746_mml-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>27747_mml-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>28461_hsa-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>28462_hsa-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>30845_ppy-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>30846_ppy-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>32747_rno-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>32748_rno-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>33228_bta-mir-142:mirbase
Length = 87
Score = 151 bits (76), Expect = 1e-37
Identities = 86/88 (97%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgtg 87
>30234_ptr-mir-142:mirbase
Length = 86
Score = 149 bits (75), Expect = 4e-37
Identities = 85/87 (97%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
|||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 1 gacagtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgt 87
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
>26473_tgu-mir-142:mirbase
Length = 71
Score = 141 bits (71), Expect = 9e-35
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 6 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 65
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcct 60
Query: 66 actttatggat 76
|||||||||||
Sbjct: 61 actttatggat 71
>33991_ssc-mir-142:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 64
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
Query: 65 tactttatggatgagtgtact 85
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>33992_ssc-mir-142:mirbase
Length = 80
Score = 137 bits (69), Expect = 1e-33
Identities = 79/81 (97%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 5 gtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcc 64
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct: 1 gtgcagtcacccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcc 59
Query: 65 tactttatggatgagtgtact 85
|||||||||||||||||||||
Sbjct: 60 tactttatggatgagtgtact 80
>31499_oan-mir-142:mirbase
Length = 110
Score = 135 bits (68), Expect = 6e-33
Identities = 84/88 (95%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 1 gacagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgt 60
||||||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||
Sbjct: 14 gacagtgcagtcatccataaagtagaaagcactactaa-cagcgctgtagggtgtagtgt 72
Query: 61 ttcctactttatggatgagtgtactgtg 88
||||||||||||||||||||||||||||
Sbjct: 73 ttcctactttatggatgagtgtactgtg 100
>25666_xla-mir-142:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 63 cctactttatggatgagtgtactg 86
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25788_xtr-mir-142-1:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 63 cctactttatggatgagtgtactg 86
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25789_xtr-mir-142-1:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 63 cctactttatggatgagtgtactg 86
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25790_xtr-mir-142-2:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 63 cctactttatggatgagtgtactg 86
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>25791_xtr-mir-142-2:mirbase
Length = 86
Score = 119 bits (60), Expect = 3e-28
Identities = 78/84 (92%)
Strand = Plus / Plus
Query: 3 cagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgttt 62
|||||||| |||||||||||||||||||||||||| |||| |||| | | ||||||||||
Sbjct: 1 cagtgcagccacccataaagtagaaagcactactagacaggactgaacgctgtagtgttt 60
Query: 63 cctactttatggatgagtgtactg 86
||||||||||||||||||||||||
Sbjct: 61 cctactttatggatgagtgtactg 84
>27390_mdo-mir-142:mirbase
Length = 74
Score = 117 bits (59), Expect = 1e-27
Identities = 72/75 (96%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 7 gcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttccta 66
|||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||||
Sbjct: 1 gcagtcacccataaagtagaaagcactactaa-cagcaatgtagggtgtagtgtttccta 59
Query: 67 ctttatggatgagtg 81
|||||||||||||||
Sbjct: 60 ctttatggatgagtg 74
>34311_dre-mir-142a:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
|||||||||||| |||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34312_dre-mir-142a:mirbase
Length = 91
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
|||||||||||| |||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 4 acagtgcagtcatccataaagtagaaagcactactaaacccctcgccacagtgtagtgtt 63
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 64 tcctactttatggatgagtgtactgt 89
>34313_dre-mir-142b:mirbase
Length = 86
Score = 107 bits (54), Expect = 1e-24
Identities = 78/86 (90%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
||||||||||||| ||||||||||| ||||||||||||| | || || ||||||||||
Sbjct: 1 acagtgcagtcactcataaagtagacagcactactaaacttctctacacagtgtagtgtt 60
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 61 tcctactttatggatgagtgtactgt 86
>27041_eca-mir-142:mirbase
Length = 64
Score = 105 bits (53), Expect = 5e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 72
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 73 ggatg 77
|||||
Sbjct: 60 ggatg 64
>27042_eca-mir-142:mirbase
Length = 64
Score = 105 bits (53), Expect = 5e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 72
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 73 ggatg 77
|||||
Sbjct: 60 ggatg 64
>31874_mmu-mir-142:mirbase
Length = 64
Score = 105 bits (53), Expect = 5e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 72
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 73 ggatg 77
|||||
Sbjct: 60 ggatg 64
>31875_mmu-mir-142:mirbase
Length = 64
Score = 105 bits (53), Expect = 5e-24
Identities = 63/65 (96%), Gaps = 1/65 (1%)
Strand = Plus / Plus
Query: 13 acccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttat 72
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct: 1 acccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttat 59
Query: 73 ggatg 77
|||||
Sbjct: 60 ggatg 64
>26716_cfa-mir-142:mirbase
Length = 63
Score = 103 bits (52), Expect = 2e-23
Identities = 62/64 (96%), Gaps = 1/64 (1%)
Strand = Plus / Plus
Query: 14 cccataaagtagaaagcactactaaacagcactgcagggtgtagtgtttcctactttatg 73
||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct: 1 cccataaagtagaaagcactactaa-cagcactggagggtgtagtgtttcctactttatg 59
Query: 74 gatg 77
||||
Sbjct: 60 gatg 63
>34604_fru-mir-142b:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
||||||| ||||||||||||||||||||||||||||||| || || ||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaactattctacacagtgtagtgtt 60
Query: 62 tcctactttatggatgagtgtactgt 87
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
>34750_tni-mir-142a:mirbase
Length = 90
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
|||||||||||| |||||||||||||||||||||||||| | || ||||||||||
Sbjct: 3 acagtgcagtcatccataaagtagaaagcactactaaactcttcgccacagtgtagtgtt 62
Query: 62 tcctactttatggatgagtgtactgt 87
||||||||||||||||||||||||||
Sbjct: 63 tcctactttatggatgagtgtactgt 88
>34751_tni-mir-142b:mirbase
Length = 86
Score = 99.6 bits (50), Expect = 3e-22
Identities = 77/86 (89%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgcagggtgtagtgtt 61
||||||| ||||||||||||||||||||||||||||||| | | || ||||||||||
Sbjct: 1 acagtgctgtcacccataaagtagaaagcactactaaacgtctttacacagtgtagtgtt 60
Query: 62 tcctactttatggatgagtgtactgt 87
|||||||||||||||||||| |||||
Sbjct: 61 tcctactttatggatgagtgcactgt 86
>34603_fru-mir-142a:mirbase
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/87 (90%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 2 acagtgcagtcacccataaagtagaaagcactactaaacagcactgc-agggtgtagtgt 60
|||||||||||| |||||||||||||||||||||||||| | ||| | |||||||||
Sbjct: 1 acagtgcagtcatccataaagtagaaagcactactaaact-ctttgccacagtgtagtgt 59
Query: 61 ttcctactttatggatgagtgtactgt 87
|||||||||||||||||||||||||||
Sbjct: 60 ttcctactttatggatgagtgtactgt 86
