miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26474_tgu-mir-144:mirbase
Length = 70
Score = 97.6 bits (49), Expect = 1e-21
Identities = 58/61 (95%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtactccc 76
|||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 4 ggatatcatcgtatactgtaagttggctatgagacactacagtatagatgatgtactccc 63
Query: 77 c 77
|
Sbjct: 64 c 64
>27044_eca-mir-144:mirbase
Length = 66
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 6 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 62
>28464_hsa-mir-144:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
>30099_ppa-mir-144:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
>30236_ptr-mir-144:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
>30848_ppy-mir-144:mirbase
Length = 86
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgcgatgagacactacagtatagatgatgtact 71
>31501_oan-mir-144:mirbase
Length = 135
Score = 89.7 bits (45), Expect = 3e-19
Identities = 54/57 (94%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 50 ggatatcatcgtatactgtaagtttgctatgagacactacagtatagatgatgtact 106
>34316_dre-mir-144:mirbase
Length = 89
Score = 83.8 bits (42), Expect = 2e-17
Identities = 55/58 (94%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactat-gagacactacagtatagatgatgtact 73
|||||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcgtatactgtaagttcattattgagacactacagtatagatgatgtact 70
>27392_mdo-mir-144:mirbase
Length = 85
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||| ||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcgtatactgtaagtttgcaatgagacactacagtatagatgatgtact 71
>27749_mml-mir-144:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
>28215_mne-mir-144:mirbase
Length = 86
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 15 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 71
>31877_mmu-mir-144:mirbase
Length = 66
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 62
>32750_rno-mir-144:mirbase
Length = 83
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcatatactgtaagtttgtgatgagacactacagtatagatgatgtact 69
>33230_bta-mir-144:mirbase
Length = 84
Score = 81.8 bits (41), Expect = 7e-17
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | | |||||||||||||||||||||||||||
Sbjct: 13 ggatatcatcatatactgtaagtttgcaacgagacactacagtatagatgatgtact 69
>25793_xtr-mir-144:mirbase
Length = 62
Score = 73.8 bits (37), Expect = 2e-14
Identities = 52/57 (91%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | | ||||||||||||||||||||||||||
Sbjct: 5 ggatatcatcatatactgtaagtttgttttaagacactacagtatagatgatgtact 61
>26718_cfa-mir-144:mirbase
Length = 60
Score = 65.9 bits (33), Expect = 4e-12
Identities = 51/57 (89%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactatgagacactacagtatagatgatgtact 73
|||||||||||||||||||||||| | | ||| ||||||||||||||||||||||
Sbjct: 2 ggatatcatcatatactgtaagtttgcgacaagatactacagtatagatgatgtact 58
>34752_tni-mir-144:mirbase
Length = 74
Score = 61.9 bits (31), Expect = 7e-11
Identities = 59/67 (88%), Gaps = 1/67 (1%)
Strand = Plus / Plus
Query: 8 ccctgggctggatatcatcatatactgtaagttcactat-gagacactacagtatagatg 66
|||||| | |||||||||| ||||||||||||| | || | ||||||||||||||||||
Sbjct: 1 ccctggacaggatatcatcttatactgtaagtttaataaagtgacactacagtatagatg 60
Query: 67 atgtact 73
|||||||
Sbjct: 61 atgtact 67
>34605_fru-mir-144:mirbase
Length = 73
Score = 60.0 bits (30), Expect = 3e-10
Identities = 52/58 (89%), Gaps = 1/58 (1%)
Strand = Plus / Plus
Query: 17 ggatatcatcatatactgtaagttcactat-gagacactacagtatagatgatgtact 73
|||||||||| |||||||||||| | || |||||||||||||||||||||||||||
Sbjct: 9 ggatatcatctaatactgtaagtttattaaagagacactacagtatagatgatgtact 66
