miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26477_tgu-mir-146c:mirbase
Length = 72
Score = 115 bits (58), Expect = 6e-27
Identities = 67/70 (95%)
Strand = Plus / Plus
Query: 8 ctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacccatgggg 67
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 3 ctcagctttgagaactgaattccatgggttgtaattgaatctgctgtcagacccatgggg 62
Query: 68 ctcagttctt 77
||||||||||
Sbjct: 63 ctcagttctt 72
>27751_mml-mir-146a:mirbase
Length = 99
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgtatcctcagctttgagaactgaattccatgggttgt 44
>28466_hsa-mir-146a:mirbase
Length = 99
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgtatcctcagctttgagaactgaattccatgggttgt 44
>30238_ptr-mir-146a:mirbase
Length = 98
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 5 gtgtatcctcagctttgagaactgaattccatgggttgt 43
>30850_ppy-mir-146a:mirbase
Length = 99
Score = 77.8 bits (39), Expect = 1e-15
Identities = 39/39 (100%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||||||||||
Sbjct: 6 gtgtatcctcagctttgagaactgaattccatgggttgt 44
>31503_oan-mir-146a:mirbase
Length = 129
Score = 69.9 bits (35), Expect = 3e-13
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 8 ctcagctttgagaactgaattccatgggttgtaattgaatcctttgtcagacccatgggg 67
|||||||||||||||||||||||| ||||||| |||| | || || ||||||| |||||
Sbjct: 23 ctcagctttgagaactgaattccacgggttgtgattgca-actctgacagacccgtgggg 81
Query: 68 ctcagttcttcagct 82
|||||||||| ||||
Sbjct: 82 ctcagttcttgagct 96
>33232_bta-mir-146a:mirbase
Length = 99
Score = 69.9 bits (35), Expect = 3e-13
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||||| ||||||
Sbjct: 6 gtgtatcctcagctttgagaactgaattccataggttgt 44
>27394_mdo-mir-146a:mirbase
Length = 91
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 2 tgtatcctcagctttgagaactgaattccatgggttgt 39
|||||| |||||||||||||||||||||||||||||||
Sbjct: 1 tgtatcttcagctttgagaactgaattccatgggttgt 38
>32752_rno-mir-146a:mirbase
Length = 95
Score = 65.9 bits (33), Expect = 5e-12
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 1 gtgtatcctcagctttgagaactgaattccatgggtt 37
|||||||||||||| ||||||||||||||||||||||
Sbjct: 2 gtgtatcctcagctctgagaactgaattccatgggtt 38
>33996_ssc-mir-146a:mirbase
Length = 78
Score = 63.9 bits (32), Expect = 2e-11
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 8 ctcagctttgagaactgaattccatgggttgt 39
||||||||||||||||||||||||||||||||
Sbjct: 3 ctcagctttgagaactgaattccatgggttgt 34
>27046_eca-mir-146a:mirbase
Length = 65
Score = 58.0 bits (29), Expect = 1e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 11 agctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||||||||||
Sbjct: 1 agctttgagaactgaattccatgggttgt 29
>25795_xtr-mir-146:mirbase
Length = 90
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 11 agctttgagaactgaattccatgggttgt 39
|||||||||||||||||||||| ||||||
Sbjct: 13 agctttgagaactgaattccataggttgt 41
>26720_cfa-mir-146a:mirbase
Length = 58
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 16 tgagaactgaattccatgggttgt 39
||||||||||||||||||||||||
Sbjct: 1 tgagaactgaattccatgggttgt 24
>31879_mmu-mir-146a:mirbase
Length = 65
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 11 agctttgagaactgaattccatgggtt 37
|||| ||||||||||||||||||||||
Sbjct: 1 agctctgagaactgaattccatgggtt 27
>25966_gga-mir-146b:mirbase
Length = 105
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 12 gctttgagaactgaattccat 32
|||||||||||||||||||||
Sbjct: 15 gctttgagaactgaattccat 35
>25967_gga-mir-146c-1:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 cagctttgagaactgaattccatgg 34
||||| |||||||||||||||||||
Sbjct: 28 cagctctgagaactgaattccatgg 52
>25968_gga-mir-146c-2:mirbase
Length = 129
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 cagctttgagaactgaattccatgg 34
||||| |||||||||||||||||||
Sbjct: 28 cagctctgagaactgaattccatgg 52
>26475_tgu-mir-146a:mirbase
Length = 116
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 10 cagctttgagaactgaattccatgg 34
||||| |||||||||||||||||||
Sbjct: 23 cagctctgagaactgaattccatgg 47
>34319_dre-mir-146b-1:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 gctttgagaactgaattccatgggt 36
|||||||||||||||||||| ||||
Sbjct: 8 gctttgagaactgaattccaagggt 32
>34320_dre-mir-146b-2:mirbase
Length = 80
Score = 42.1 bits (21), Expect = 7e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 12 gctttgagaactgaattccatgggt 36
|||||||||||||||||||| ||||
Sbjct: 8 gctttgagaactgaattccaagggt 32
