miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>26476_tgu-mir-146b:mirbase
Length = 72
Score = 103 bits (52), Expect = 3e-23
Identities = 68/72 (94%), Gaps = 1/72 (1%)
Strand = Plus / Plus
Query: 9 tgcttggctttgagaactgaattccataggcgttaaagcatccaaaaatgccctatggat 68
||||||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 1 tgcttggctctgagaactgaattccataggcgttgaagcctcc-aaaatgccctatggat 59
Query: 69 tcagttctgcag 80
||||||||||||
Sbjct: 60 tcagttctgcag 71
>31504_oan-mir-146b:mirbase
Length = 109
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 9 tgcttggctttgagaactgaattccataggc 39
||||||||| |||||||||||||||||||||
Sbjct: 15 tgcttggctctgagaactgaattccataggc 45
>25795_xtr-mir-146:mirbase
Length = 90
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccatagg 38
||||||||||||||||||||||||
Sbjct: 14 gctttgagaactgaattccatagg 37
>33232_bta-mir-146a:mirbase
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccatagg 38
||||||||||||||||||||||||
Sbjct: 17 gctttgagaactgaattccatagg 40
>34319_dre-mir-146b-1:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 cttggctttgagaactgaattcca 34
||||||||||||||||||||||||
Sbjct: 4 cttggctttgagaactgaattcca 27
>34320_dre-mir-146b-2:mirbase
Length = 80
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 11 cttggctttgagaactgaattcca 34
||||||||||||||||||||||||
Sbjct: 4 cttggctttgagaactgaattcca 27
>27048_eca-mir-146b:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 3 tggctctgagaactgaattccataggc 29
>27047_eca-mir-146b:mirbase
Length = 74
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 3 tggctctgagaactgaattccataggc 29
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 2 tggctctgagaactgaattccataggc 28
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 23 tggctctgagaactgaattccataggc 49
>33233_bta-mir-146b:mirbase
Length = 106
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 20 tggctctgagaactgaattccataggc 46
>33997_ssc-mir-146b:mirbase
Length = 99
Score = 46.1 bits (23), Expect = 5e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 13 tggctttgagaactgaattccataggc 39
||||| |||||||||||||||||||||
Sbjct: 15 tggctctgagaactgaattccataggc 41
>25497_pma-mir-146:mirbase
Length = 75
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>25965_gga-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 12 gctttgagaactgaattccat 32
>26477_tgu-mir-146c:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 7 gctttgagaactgaattccat 27
>26721_cfa-mir-146b:mirbase
Length = 61
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 1 tgagaactgaattccataggc 21
>27046_eca-mir-146a:mirbase
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 2 gctttgagaactgaattccat 22
>27394_mdo-mir-146a:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 11 gctttgagaactgaattccat 31
>27751_mml-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 17 gctttgagaactgaattccat 37
>27752_mml-mir-146b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>27753_mml-mir-146b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>28466_hsa-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 17 gctttgagaactgaattccat 37
>28467_hsa-mir-146b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>28468_hsa-mir-146b:mirbase
Length = 73
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>30238_ptr-mir-146a:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 16 gctttgagaactgaattccat 36
>30239_ptr-mir-146b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 8 tgagaactgaattccataggc 28
>30850_ppy-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 17 gctttgagaactgaattccat 37
>30851_ppy-mir-146b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>30852_ppy-mir-146b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 9 tgagaactgaattccataggc 29
>32753_rno-mir-146b:mirbase
Length = 88
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 19 tgagaactgaattccataggc 39
|||||||||||||||||||||
Sbjct: 15 tgagaactgaattccataggc 35
>33996_ssc-mir-146a:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattccat 35
|||||||||||||||||||||
Sbjct: 7 gctttgagaactgaattccat 27
>31503_oan-mir-146a:mirbase
Length = 129
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 15 gctttgagaactgaattcca 34
||||||||||||||||||||
Sbjct: 27 gctttgagaactgaattcca 46
