miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25967_gga-mir-146c-1:mirbase
Length = 129
Score = 256 bits (129), Expect = 3e-69
Identities = 129/129 (100%)
Strand = Plus / Plus
Query: 1 gaagatgtgacgaatcttggcagttcccagctctgagaactgaattccatggactggttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaagatgtgacgaatcttggcagttcccagctctgagaactgaattccatggactggttt 60
Query: 61 caattccatgcgttcagtccatggtattcagttctctagcttggctgcatcaaacttcac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 caattccatgcgttcagtccatggtattcagttctctagcttggctgcatcaaacttcac 120
Query: 121 aactgctaa 129
|||||||||
Sbjct: 121 aactgctaa 129
>26475_tgu-mir-146a:mirbase
Length = 116
Score = 198 bits (100), Expect = 7e-52
Identities = 112/116 (96%)
Strand = Plus / Plus
Query: 6 tgtgacgaatcttggcagttcccagctctgagaactgaattccatggactggtttcaatt 65
|||||||||| ||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1 tgtgacgaatgttggcagttcccagctctgagaactgaattccatggactggttccagtt 60
Query: 66 ccatgcgttcagtccatggtattcagttctctagcttggctgcatcaaacttcaca 121
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatgtgttcagtccatggtattcagttctctagcttggctgcatcaaacttcaca 116
>25796_xtr-mir-146b:mirbase
Length = 100
Score = 54.0 bits (27), Expect = 3e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccatggactg 56
|||||||||||||||||||||||||||
Sbjct: 17 gctctgagaactgaattccatggactg 43
>32752_rno-mir-146a:mirbase
Length = 95
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
|||||||||||||||||||||||||
Sbjct: 11 cagctctgagaactgaattccatgg 35
>31879_mmu-mir-146a:mirbase
Length = 65
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 29 agctctgagaactgaattccatgg 52
||||||||||||||||||||||||
Sbjct: 1 agctctgagaactgaattccatgg 24
>25965_gga-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 10 cagctttgagaactgaattccatgg 34
>26476_tgu-mir-146b:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 7 gctctgagaactgaattccat 27
>26477_tgu-mir-146c:mirbase
Length = 72
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 5 cagctttgagaactgaattccatgg 29
>27048_eca-mir-146b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 5 gctctgagaactgaattccat 25
>27047_eca-mir-146b:mirbase
Length = 74
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 5 gctctgagaactgaattccat 25
>27394_mdo-mir-146a:mirbase
Length = 91
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 9 cagctttgagaactgaattccatgg 33
>27395_mdo-mir-146b:mirbase
Length = 68
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 4 gctctgagaactgaattccat 24
>27751_mml-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 15 cagctttgagaactgaattccatgg 39
>28466_hsa-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 15 cagctttgagaactgaattccatgg 39
>30238_ptr-mir-146a:mirbase
Length = 98
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 14 cagctttgagaactgaattccatgg 38
>30850_ppy-mir-146a:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 15 cagctttgagaactgaattccatgg 39
>31504_oan-mir-146b:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 21 gctctgagaactgaattccat 41
>31880_mmu-mir-146b:mirbase
Length = 109
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 25 gctctgagaactgaattccat 45
>33233_bta-mir-146b:mirbase
Length = 106
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 22 gctctgagaactgaattccat 42
>33996_ssc-mir-146a:mirbase
Length = 78
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 28 cagctctgagaactgaattccatgg 52
||||| |||||||||||||||||||
Sbjct: 5 cagctttgagaactgaattccatgg 29
>33997_ssc-mir-146b:mirbase
Length = 99
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 30 gctctgagaactgaattccat 50
|||||||||||||||||||||
Sbjct: 17 gctctgagaactgaattccat 37
>27046_eca-mir-146a:mirbase
Length = 65
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 29 agctctgagaactgaattccatgg 52
|||| |||||||||||||||||||
Sbjct: 1 agctttgagaactgaattccatgg 24
