miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>25970_gga-mir-147-2:mirbase
Length = 70
Score = 139 bits (70), Expect = 3e-34
Identities = 70/70 (100%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 61 ctgctacatt 70
>26478_tgu-mir-147:mirbase
Length = 70
Score = 123 bits (62), Expect = 2e-29
Identities = 65/66 (98%)
Strand = Plus / Plus
Query: 5 tagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgc 64
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tagtggaatcatttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgc 60
Query: 65 tacatt 70
||||||
Sbjct: 61 tacatt 66
>27396_mdo-mir-147b:mirbase
Length = 82
Score = 83.8 bits (42), Expect = 1e-17
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || || ||||||||| ||||||||||| |||||||||||| |||||
Sbjct: 7 aatctagtggaaacatctccgcacaaactagactactgaaaccagtgtgcggaagtgctt 66
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 67 ctgctacatt 76
>26722_cfa-mir-147:mirbase
Length = 86
Score = 67.9 bits (34), Expect = 8e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || | ||||||||||| || || || | ||||||||||||||||||
Sbjct: 9 aatctagtggaaacattgctgcacaaactagattatggataccagtgtgcggaaatgctt 68
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 69 ctgctacatt 78
>28470_hsa-mir-147b:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 8e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 65 ctgctacatt 74
>30241_ptr-mir-147b:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 8e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 4 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 63
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 64 ctgctacatt 73
>30854_ppy-mir-147b:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 8e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || ||||||||||||| || | || | ||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactagattctggacaccagtgtgcggaaatgctt 64
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 65 ctgctacatt 74
>32754_rno-mir-147:mirbase
Length = 79
Score = 67.9 bits (34), Expect = 8e-13
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| |||||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 5 aatctagtggaaacacttctgcacaaactcgattt-tgatgccagtgtgcggaaatgctt 63
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 64 ctgctacatt 73
>33234_bta-mir-147:mirbase
Length = 80
Score = 67.9 bits (34), Expect = 8e-13
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| |||||||||||| || || || || | ||||||||||||||||||
Sbjct: 5 aatctagtggaaacacttctgcacaggctagattatggataccagtgtgcggaaatgctt 64
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 65 ctgctacatt 74
>27049_eca-mir-147b:mirbase
Length = 80
Score = 60.0 bits (30), Expect = 2e-10
Identities = 48/54 (88%)
Strand = Plus / Plus
Query: 17 ttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttctgctacatt 70
||||||||||||| || || || |||||||||| |||||||||||||||||||
Sbjct: 21 ttctgcacaaactggagtatggatatcagtgtgccgaaatgcttctgctacatt 74
>31881_mmu-mir-147:mirbase
Length = 79
Score = 60.0 bits (30), Expect = 2e-10
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || ||||||||||||| || | ||| ||||||||||||||||||
Sbjct: 5 aatctagtggaaacatttctgcacaaactaga-tgttgatgccagtgtgcggaaatgctt 63
Query: 61 ctgctacatt 70
||||||||||
Sbjct: 64 ctgctacatt 73
>27754_mml-mir-147a:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgctacatt 70
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>28217_mne-mir-147:mirbase
Length = 72
Score = 48.1 bits (24), Expect = 8e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgctacatt 70
||||||| ||||||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgctacatt 72
>27755_mml-mir-147b:mirbase
Length = 80
Score = 44.1 bits (22), Expect = 1e-05
Identities = 58/70 (82%)
Strand = Plus / Plus
Query: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
|||||||||||| || ||| ||||||||| || | || | |||||||||||| |||||
Sbjct: 5 aatctagtggaaacatttccgcacaaactagattctggacaccagtgtgcggaagtgctt 64
Query: 61 ctgctacatt 70
||||| ||||
Sbjct: 65 ctgctgcatt 74
>31505_oan-mir-147:mirbase
Length = 110
Score = 42.1 bits (21), Expect = 5e-05
Identities = 46/53 (86%), Gaps = 1/53 (1%)
Strand = Plus / Plus
Query: 9 ggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgcttc 61
|||||||| |||||||||||| | || ||| || ||||||||||| |||||||
Sbjct: 26 ggaatcacctctgcacaaactcgtcttctg-aaccagtgtgcggagatgcttc 77
>27619_sla-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgctacatt 70
||||||| |||||||||||||| |||||
Sbjct: 45 cagtgtgtggaaatgcttctgccacatt 72
>28469_hsa-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgcta 66
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30100_ppa-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgcta 66
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30240_ptr-mir-147a:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgcta 66
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
>30853_ppy-mir-147:mirbase
Length = 72
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 43 cagtgtgcggaaatgcttctgcta 66
||||||| ||||||||||||||||
Sbjct: 45 cagtgtgtggaaatgcttctgcta 68
